Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30918
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical p...   163   8e-41
AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical ...    31   0.81 
U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical pr...    28   5.7  
L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (spli...    28   5.7  
Z73102-12|CAA97406.1|  430|Caenorhabditis elegans Hypothetical p...    28   7.6  
Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z99281-10|CAB16516.1|  473|Caenorhabditis elegans Hypothetical
           protein Y57G11C.15 protein.
          Length = 473

 Score =  163 bits (397), Expect = 8e-41
 Identities = 79/84 (94%), Positives = 81/84 (96%)
 Frame = +2

Query: 257 SSAKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAFGGLCIGALSVLADFLGAIGSG 436
           SSAKDVAKQLKEQQMVMRGHR+ SMIHELNRYIPTAAAFGGLCIGALSV ADF+GAIGSG
Sbjct: 382 SSAKDVAKQLKEQQMVMRGHREKSMIHELNRYIPTAAAFGGLCIGALSVTADFMGAIGSG 441

Query: 437 TGILLAVTIIYQYFEIFVKEQAEM 508
           TGILLAVTIIYQYFEIFVKEQ EM
Sbjct: 442 TGILLAVTIIYQYFEIFVKEQQEM 465



 Score =  121 bits (291), Expect = 6e-28
 Identities = 55/89 (61%), Positives = 63/89 (70%)
 Frame = +3

Query: 3   NLYVISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPV 182
           NLYVISQMLA KF GNF +N+LG W+D              LCYYLSPPESL HI  DP+
Sbjct: 300 NLYVISQMLAGKFGGNFFINLLGTWSDNTGYRSYPTGG---LCYYLSPPESLGHIFEDPI 356

Query: 183 HALLYVLFMLGSCAFFSKTWIDVSAPRPK 269
           H ++Y++FMLGSCAFFSKTWIDVS    K
Sbjct: 357 HCIIYIVFMLGSCAFFSKTWIDVSGSSAK 385


>AL021466-1|CAA16282.1|  308|Caenorhabditis elegans Hypothetical
           protein VF36H2L.1 protein.
          Length = 308

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
 Frame = +3

Query: 129 CYYLSPPESLA----HIAHDPVHALLYVL---FMLGSCAFFSKTWIDVSAPRP 266
           CY  S   S+A     IAHDPV  +L+ L   F L S  F S  W+ +S   P
Sbjct: 9   CYIASFSPSIALFCSFIAHDPVRIILFFLGSFFWLVSLLFSSLAWLGLSTVLP 61


>U42832-4|AAA83574.4|  462|Caenorhabditis elegans Hypothetical
           protein F01E11.5a protein.
          Length = 462

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/37 (35%), Positives = 26/37 (70%)
 Frame = +2

Query: 263 AKDVAKQLKEQQMVMRGHRDNSMIHELNRYIPTAAAF 373
           AK  A+Q+  Q+ V+R H +++++HE++  +PT+  F
Sbjct: 213 AKHRARQIYRQK-VIRKHIESTILHEISHVLPTSDEF 248


>Z81489-4|CAB04010.1|  361|Caenorhabditis elegans Hypothetical
           protein C55A1.5 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 377 GLCIGALSVLADFLGAIGSGTGILLAVTIIYQYFEIF 487
           GL I  + VL  F  +I + T  +LAV  +Y+Y+ IF
Sbjct: 96  GLKIEIVQVLMAFYTSIYASTICMLAVQFVYRYWAIF 132


>U64834-2|AAB04823.2| 1145|Caenorhabditis elegans Hypothetical
           protein F54D11.2 protein.
          Length = 1145

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 453 ASSIPVPEPMAPRKSASTDRAPMHSPP 373
           A+  P PEP+ P K    + AP  S P
Sbjct: 206 AAETPAPEPLVPEKKPKIEDAPTTSSP 232


>L14433-3|AAA27977.1| 2329|Caenorhabditis elegans Yeast prp (splicing
            factor) relatedprotein 8 protein.
          Length = 2329

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +3

Query: 15   ISQMLAVKFSGNFLVNVLGVWADXXXXXXXXXXXXXXLCYYLSPPESLAHIAHDPVH 185
            +  +L+ +F G F+V   GVW                +C  LS P+   H  H PVH
Sbjct: 2252 VQMLLSDRFLGYFMVPSNGVWNYNFQGQRWSPAMKFDVC--LSNPKEYYHEDHRPVH 2306


>Z73102-12|CAA97406.1|  430|Caenorhabditis elegans Hypothetical
           protein B0035.11 protein.
          Length = 430

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +1

Query: 286 EGTADGDAR-SPRQLHDPRTEPLHPDGG 366
           E   D D+R +PRQL D   + +HP GG
Sbjct: 46  ESDDDDDSRPAPRQLSDSSDDNIHPRGG 73


>Z69664-4|CAA93517.1|  483|Caenorhabditis elegans Hypothetical
           protein K04D7.3 protein.
          Length = 483

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -2

Query: 499 LFLDKDLEVLVNDGDGEQYPSAGADGPEEVGQH*QSPDAQSSE-RGRRRDVAVQF 338
           L L+K +EV+  DG  EQ    GA+  + +G+   S   +  + RGR    AV F
Sbjct: 374 LLLEKAVEVIKRDGLIEQSREVGAEFQKRLGELQASSGGKLDQARGRGTFAAVDF 428


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,274,699
Number of Sequences: 27780
Number of extensions: 265434
Number of successful extensions: 903
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 897
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)