Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30916
(681 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 209 3e-55
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 201 9e-53
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 183 2e-47
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 169 2e-43
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 125 5e-30
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch... 77 2e-15
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 54 3e-08
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe... 36 0.005
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo... 31 0.15
SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomy... 29 0.82
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 29 0.82
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po... 28 1.4
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 3.3
SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|... 26 5.8
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 5.8
SPAC823.11 |||sphingosine-1-phosphate phosphatase |Schizosacchar... 26 5.8
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 26 5.8
SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex al... 26 5.8
SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr 3||... 25 7.7
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 7.7
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 209 bits (510), Expect = 3e-55
Identities = 120/204 (58%), Positives = 136/204 (66%), Gaps = 4/204 (1%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 259
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPHN 63
Query: 260 QYSMPNVSSDVSSKMLLCKPT*STGLSR--LSVIR--GKPKIKVAYKGEDKTFFPEEVSS 427
++ + + K P + + VI GKP ++V YKGE KTF PEE+SS
Sbjct: 64 --TIFDAKRLIGRKF--DDPEVQSDMKHWPFKVISKDGKPVLQVEYKGETKTFTPEEISS 119
Query: 428 MVLTKMKETAEAYLGQNCAECSYHGSRYFNDSQRQATKDAGTIFWLETFSEFINEPTAAA 607
MVL KM+ETAEAYLG + YFNDSQRQATKDAG I L INEPTAAA
Sbjct: 120 MVLMKMRETAEAYLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVL-RIINEPTAAA 178
Query: 608 IAYGSLTKRGTGERNVLYLWTSGG 679
IAYG L + GE NVL GG
Sbjct: 179 IAYG-LDRSNQGESNVLIFDLGGG 201
Score = 69.3 bits (162), Expect = 5e-13
Identities = 28/34 (82%), Positives = 32/34 (94%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVS 351
PHNTIFDAKRLIGRKF+D VQ+DMKHWPF+V+S
Sbjct: 61 PHNTIFDAKRLIGRKFDDPEVQSDMKHWPFKVIS 94
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 201 bits (490), Expect = 9e-53
Identities = 116/204 (56%), Positives = 135/204 (66%), Gaps = 4/204 (1%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 259
++GIDLGTTYSCVG F + +VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 4 SIGIDLGTTYSCVGHFSNNRVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-- 61
Query: 260 QYSMPNVSSDVSSKMLLCKPT*STGLSR--LSVIR--GKPKIKVAYKGEDKTFFPEEVSS 427
++ + + + P + + VI GKP I+V +KGE KTF PEE+SS
Sbjct: 62 HNTIFDAKRLIGRR--FNDPEVQSDMKHWPFKVIEKDGKPLIQVEFKGETKTFTPEEISS 119
Query: 428 MVLTKMKETAEAYLGQNCAECSYHGSRYFNDSQRQATKDAGTIFWLETFSEFINEPTAAA 607
MVL KM+E+AEA+LG + YFNDSQRQATKDAG I L INEPTAAA
Sbjct: 120 MVLLKMRESAEAFLGGKVTDAVVTVPAYFNDSQRQATKDAGLIAGLNVL-RIINEPTAAA 178
Query: 608 IAYGSLTKRGTGERNVLYLWTSGG 679
IAYG L + E NVL GG
Sbjct: 179 IAYG-LDRSNQHETNVLIFDLGGG 201
Score = 65.7 bits (153), Expect = 6e-12
Identities = 26/33 (78%), Positives = 30/33 (90%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVV 348
PHNTIFDAKRLIGR+F D VQ+DMKHWPF+V+
Sbjct: 61 PHNTIFDAKRLIGRRFNDPEVQSDMKHWPFKVI 93
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 183 bits (445), Expect = 2e-47
Identities = 99/194 (51%), Positives = 128/194 (65%), Gaps = 1/194 (0%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-TT 259
+GIDLGTTYSCV V ++G+VEIIANDQGNR TPSYVAFT+ ERL+G+AAKNQ NP T
Sbjct: 38 IGIDLGTTYSCVAVMKNGRVEIIANDQGNRITPSYVAFTEDERLVGEAAKNQAPSNPENT 97
Query: 260 QYSMPNVSSDVSSKMLLCKPT*STGLSRLSVIRGKPKIKVAYKGEDKTFFPEEVSSMVLT 439
+ + + + + K S ++ + +P ++V G+ K F PEE+S+M+L+
Sbjct: 98 IFDIKRLIGRKFDEKTMAKDIKSFPFHIVN-DKNRPLVEVNVGGKKKKFTPEEISAMILS 156
Query: 440 KMKETAEAYLGQNCAECSYHGSRYFNDSQRQATKDAGTIFWLETFSEFINEPTAAAIAYG 619
KMK+TAEAYLG+ YFND+QRQATKDAGTI L +NEPTAAAIAYG
Sbjct: 157 KMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVI-RIVNEPTAAAIAYG 215
Query: 620 SLTKRGTGERNVLY 661
L K T + V+Y
Sbjct: 216 -LDKTDTEKHIVVY 228
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 169 bits (412), Expect = 2e-43
Identities = 101/201 (50%), Positives = 120/201 (59%), Gaps = 1/201 (0%)
Frame = +2
Query: 80 AVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP-T 256
A+GIDLGTTYSCV V++ VEII NDQG RTTPS+VAFT+TERL+GDAAKNQ AMNP
Sbjct: 8 AIGIDLGTTYSCVAVWETANVEIIPNDQGARTTPSFVAFTETERLVGDAAKNQAAMNPRN 67
Query: 257 TQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVIRGKPKIKVAYKGEDKTFFPEEVSSMVL 436
T + + K + G P I+V Y GE K F +E+S+MVL
Sbjct: 68 TVFDAKRLIGRRYEDPETQKDIKHWPFKVID-NNGIPTIEVNYLGEKKQFTAQEISAMVL 126
Query: 437 TKMKETAEAYLGQNCAECSYHGSRYFNDSQRQATKDAGTIFWLETFSEFINEPTAAAIAY 616
TKMKE +EA L + + YF+DSQR ATKDAG I L INEPTAAAIAY
Sbjct: 127 TKMKEISEAKLNKRVEKAVITVPAYFSDSQRAATKDAGAIAGLNVL-RIINEPTAAAIAY 185
Query: 617 GSLTKRGTGERNVLYLWTSGG 679
G L + +NVL GG
Sbjct: 186 G-LDAKSDKPKNVLIFDLGGG 205
Score = 59.3 bits (137), Expect = 5e-10
Identities = 22/35 (62%), Positives = 29/35 (82%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVVSD 354
P NT+FDAKRLIGR++ED Q D+KHWPF+V+ +
Sbjct: 65 PRNTVFDAKRLIGRRYEDPETQKDIKHWPFKVIDN 99
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 125 bits (302), Expect = 5e-30
Identities = 78/191 (40%), Positives = 106/191 (55%), Gaps = 8/191 (4%)
Frame = +2
Query: 71 KAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 247
K P +GIDLGTT SC+ + + ++IAN +G RTTPS VAFT D ERL+G +AK Q +
Sbjct: 49 KGPVIGIDLGTTTSCLAIMEGQTPKVIANAEGTRTTPSVVAFTKDGERLVGVSAKRQAVI 108
Query: 248 NPTTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVIRGKPKIKVAYKGED-------KTF 406
NP + ++K L+ + + R I+ P V + D KT+
Sbjct: 109 NPENTF--------FATKRLIGRRFKEPEVQR--DIKEVPYKIVEHSNGDAWLEARGKTY 158
Query: 407 FPEEVSSMVLTKMKETAEAYLGQNCAECSYHGSRYFNDSQRQATKDAGTIFWLETFSEFI 586
P ++ +L+KM+ETA YLG++ YFNDSQRQATK AG I L +
Sbjct: 159 SPSQIGGFILSKMRETASTYLGKDVKNAVVTVPAYFNDSQRQATKAAGAIAGLNVL-RVV 217
Query: 587 NEPTAAAIAYG 619
NEPTAAA+AYG
Sbjct: 218 NEPTAAALAYG 228
Score = 42.3 bits (95), Expect = 6e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +1
Query: 250 PHNTIFDAKRLIGRKFEDATVQADMKHWPFEVV 348
P NT F KRLIGR+F++ VQ D+K P+++V
Sbjct: 110 PENTFFATKRLIGRRFKEPEVQRDIKEVPYKIV 142
>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
Pss1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 720
Score = 77.0 bits (181), Expect = 2e-15
Identities = 56/190 (29%), Positives = 97/190 (51%), Gaps = 2/190 (1%)
Frame = +2
Query: 68 AKAPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAM 247
++ VGID G + + + V ++ +++I N+ NR+TPS V++ + R +G+AAK+ A
Sbjct: 3 SRTNVVGIDFGNSKTVIAVARNRAIDVIVNEVSNRSTPSLVSYGERSRFLGEAAKSAEAS 62
Query: 248 N-PTTQYSMPNVSSDVSSKMLLCKPT*STGLS-RLSVIRGKPKIKVAYKGEDKTFFPEEV 421
N T S+ ++ + K S +S +L+ + G KV Y E+ F ++
Sbjct: 63 NFRNTVGSLKRLAGRTYDDPEI-KDIESNFISAKLTEVDGFVGAKVQYLNEETAFSNIQL 121
Query: 422 SSMVLTKMKETAEAYLGQNCAECSYHGSRYFNDSQRQATKDAGTIFWLETFSEFINEPTA 601
+ TK+K AEA L + ++ +F D QR+A +A I L +N+ A
Sbjct: 122 IAAYFTKIKAIAEAELIGSVSDVVISIPAWFTDIQRRALLEAANIAGLNPL-RLMNDNAA 180
Query: 602 AAIAYGSLTK 631
AA+ YG +TK
Sbjct: 181 AALTYG-ITK 189
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 53.6 bits (123), Expect = 3e-08
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 7/184 (3%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTTQ 262
+GI G S + + GK +++AN++GNR PS +++ + G A+ Q+ N
Sbjct: 27 IGISFGNQNSSIAFNRDGKTDVLANEEGNRQIPSILSYHGDQEYHGVQARGQLVRN--AD 84
Query: 263 YSMPNVSSDVSSKMLLCKPT*STGLSRLSV-IRGKPKIKVAYKGE------DKTFFPEEV 421
S+ N D+ K S V + G+ K+ + + +K E
Sbjct: 85 NSVTNF-RDLLGKSHDELTLHHCHYSANPVNVEGQIGFKITVQEDEESDPKEKILTAHEA 143
Query: 422 SSMVLTKMKETAEAYLGQNCAECSYHGSRYFNDSQRQATKDAGTIFWLETFSEFINEPTA 601
S L ++ E+AE +LG C YF D+QR+A + A L + I++P A
Sbjct: 144 SVRHLRRLTESAEDFLGTKVNGCVMSVPVYFTDAQRKALESAANEAGLPVL-QLIHDPAA 202
Query: 602 AAIA 613
+A
Sbjct: 203 VILA 206
>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 848
Score = 35.9 bits (79), Expect = 0.005
Identities = 42/203 (20%), Positives = 83/203 (40%), Gaps = 5/203 (2%)
Frame = +2
Query: 83 VGIDLGTTYSCVGVFQHG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTT 259
+ ID GT ++ + + G +EI+ R S VAF ER+ G A N P
Sbjct: 25 LAIDYGTEWTKAALIKPGIPLEIVLTKDTRRKEQSAVAFKGNERIFGVDASNLATRFPA- 83
Query: 260 QYSMPNVSS--DVSSKMLLCKPT*STGLSRLSVIRGKPKIK-VAYK-GEDKTFFPEEVSS 427
+S+ NV D + + + + ++ + +++ +++ + EE+ +
Sbjct: 84 -HSIRNVKELLDTAGLESVLVQKYQSSYPAIQLVENEETTSGISFVISDEENYSLEEIIA 142
Query: 428 MVLTKMKETAEAYLGQNCAECSYHGSRYFNDSQRQATKDAGTIFWLETFSEFINEPTAAA 607
M + AE + + +FN+ QR +A I + I++ A A
Sbjct: 143 MTMEHYISLAEEMAHEKITDLVLTVPPHFNELQRSILLEAARILNKHVLA-LIDDNVAVA 201
Query: 608 IAYGSLTKRGTGERNVLYLWTSG 676
I Y SL++ + + ++ SG
Sbjct: 202 IEY-SLSRSFSTDPTYNIIYDSG 223
>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2244
Score = 31.1 bits (67), Expect = 0.15
Identities = 20/68 (29%), Positives = 33/68 (48%)
Frame = +2
Query: 179 PSYVAFTDTERLIGDAAKNQVAMNPTTQYSMPNVSSDVSSKMLLCKPT*STGLSRLSVIR 358
P +A T ER++ AAK A+N T Y++ ++ D K++ C S +S +
Sbjct: 1252 PQDLAPTTIERIVDAAAKIGEALNITGPYNIQFIAKDNEIKVIECNVRASRSFPFVSKVI 1311
Query: 359 GKPKIKVA 382
G I +A
Sbjct: 1312 GVDMISMA 1319
>SPBC14F5.09c |ade8||adenylosuccinate lyase Ade8|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 482
Score = 28.7 bits (61), Expect = 0.82
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = -1
Query: 489 HSAQFCPR*ASA-VSFIFVSTMELTSSGKKVLSSPLYATLILGLPLITDN-LERPVLHVG 316
+S R ASA +S +F M + + + L+ + A LGL ITD +E+ HV
Sbjct: 7 YSTPLTARYASAEMSHLFSREMRINTWRQLWLNLAI-AEKQLGLTQITDEAIEQLKAHVK 65
Query: 315 LHSSIFELTSDETFGIEYCVVGFIATWFLAASPMRRSVSVNAT 187
+ + FE+ + E + V+ I T+ LAA + + AT
Sbjct: 66 ITAPEFEIAAKEEKRQRHDVMAHIYTYGLAAPAASGIIHLGAT 108
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 28.7 bits (61), Expect = 0.82
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 75 HPQ*ESIWVPRTLALVSSSTGRWRSSPTTRAT 170
HP S W+P LVS+ W +SP+++ T
Sbjct: 283 HPLYSSSWIPTLHDLVSTRCSVWLTSPSSQRT 314
>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 549
Score = 27.9 bits (59), Expect = 1.4
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 420 TSSG--KKVLSSPLYATLILGLPLITDNLERPV 328
TSSG K+V +S Y + + PL+TD E+PV
Sbjct: 100 TSSGVTKEVRASKKYTSSNVEFPLVTDGKEKPV 132
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/53 (33%), Positives = 27/53 (50%)
Frame = +3
Query: 108 TLALVSSSTGRWRSSPTTRATGPLRLMLRSQTPSVSSEMPPRTRWR*TPQHNI 266
T +L S+STG+ T++ T L + PS S+ P T + TP +NI
Sbjct: 282 TSSLTSNSTGK-----TSKTTDLLIAASKKSLPSNSTPSKPNTSFFETPHNNI 329
>SPAC17G8.02 |||uridine ribohydrolase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 330
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -1
Query: 402 VLSSPL--YATLILGLPLITDNLERPVLHVGLHSSIFELTSDETFGI 268
V + PL A L+ P +TDN+ER + +G + I +TS F +
Sbjct: 136 VATGPLTNIALLLATYPSVTDNIER-FIFMGGSTGIGNITSQAEFNV 181
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 506 RYFNDSQRQATKDAGTIFWLETFSEFIN 589
R+FND +QA K G + L EF+N
Sbjct: 115 RWFNDLHKQAEKHGGRVVRLLGNHEFMN 142
>SPAC823.11 |||sphingosine-1-phosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.8 bits (54), Expect = 5.8
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = -2
Query: 161 GRWR*SPPSRAGRHQRKSTWYPDRFLLRVLLPFCIFNQSCYLFLKQLSKRARL 3
G W SP S + H ++++ +F +RVL C+ L K +K+A L
Sbjct: 276 GTWFASPESLSHLHDNLNSYFLLKFFVRVLFGVCMI-----LIWKSFAKQALL 323
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.8 bits (54), Expect = 5.8
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +2
Query: 224 AAKNQVAMNPTTQYSMPNVSSDVSSKML 307
A K Q+ +NP + +PNV D + +L
Sbjct: 323 ARKRQIQLNPFPPWDVPNVLEDQMNSLL 350
>SPBC25H2.05 |egd2|nac1|nascent polypeptide-associated complex alpha
subunit Egd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 25.8 bits (54), Expect = 5.8
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 419 VSSMVLTKMKETAEAYLGQNCAECSYHGSRYFNDSQRQATK 541
++ ++ K A LG+ E +R FN+SQ+QAT+
Sbjct: 57 INEPIVYKSSNNAYIVLGKVTVEDMAAQARAFNESQKQATE 97
>SPCC162.11c |||uridine kinase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 454
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -3
Query: 538 CGLSLRVIEVAGTVITAFCTVLPKISFGSFL 446
CG+S V+ GT+ TA C P + G L
Sbjct: 321 CGVS--VLRSGGTLETALCRQFPTVCLGKIL 349
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.4 bits (53), Expect = 7.7
Identities = 17/76 (22%), Positives = 28/76 (36%)
Frame = +2
Query: 401 TFFPEEVSSMVLTKMKETAEAYLGQNCAECSYHGSRYFNDSQRQATKDAGTIFWLETFSE 580
+FF E + L K+ + Y+ NC E H N +Q +L +
Sbjct: 547 SFFAEATCHLFLEKLPTITKTYVYSNCKEIPDHILEMINALYQQTRALVACTGYLSSDYP 606
Query: 581 FINEPTAAAIAYGSLT 628
I E + Y +L+
Sbjct: 607 KIYEAFSGTFVYRNLS 622
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,046,775
Number of Sequences: 5004
Number of extensions: 66319
Number of successful extensions: 246
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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