Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30914
(810 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase... 80 4e-16
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 64 3e-11
SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase |S... 60 3e-10
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 32 0.11
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 29 0.78
SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|c... 27 3.2
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch... 27 4.2
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 27 4.2
SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase I|Schizosacchar... 26 7.3
SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual 26 7.3
SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces pombe... 26 7.3
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 26 7.3
>SPBC839.17c |fkh1||FKBP-type peptidyl-prolyl cis-trans isomerase
Fkh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 112
Score = 79.8 bits (188), Expect = 4e-16
Identities = 36/64 (56%), Positives = 46/64 (71%)
Frame = +1
Query: 259 PFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELI 438
PF IGVGQ+I+GWD+G+ M +GEK KLTI GYG RG +IPP++TL F+VEL+
Sbjct: 46 PFVCTIGVGQLIRGWDEGVPKMSLGEKAKLTITPDYGYGPRGFPGLIPPNSTLLFDVELL 105
Query: 439 NIGD 450
I D
Sbjct: 106 AIND 109
Score = 44.8 bits (101), Expect = 1e-05
Identities = 19/26 (73%), Positives = 21/26 (80%)
Frame = +2
Query: 176 KHGDMLTMHYTGTLDDGHKFDSSYDR 253
K GD +TMHYTGTL +G KFDSS DR
Sbjct: 18 KPGDRITMHYTGTLTNGKKFDSSVDR 43
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 63.7 bits (148), Expect = 3e-11
Identities = 29/63 (46%), Positives = 43/63 (68%)
Frame = +1
Query: 256 QPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVEL 435
+PF F +G G+VI+GWD G+ M G +RK+TIPA + YG + IP ++TL FEV+L
Sbjct: 299 KPFAFILGRGEVIRGWDVGVAGMQEGGERKITIPAPMAYGNQSIPG-IPKNSTLVFEVKL 357
Query: 436 INI 444
+ +
Sbjct: 358 VRV 360
Score = 26.6 bits (56), Expect = 4.2
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = +2
Query: 107 AGPEVTELKTEVV--SVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSS 244
+ P+ LK VV V G + +G + M Y G L++G FD +
Sbjct: 248 SSPKTRTLKGGVVVTDVKTGSGASATNGKKVEMRYIGKLENGKVFDKN 295
>SPAC27F1.06c |||FKBP-type peptidyl-prolyl cis-trans isomerase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 362
Score = 60.5 bits (140), Expect = 3e-10
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +1
Query: 256 QPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVEL 435
+PFTF +G+ +VIKGWD G++ M VG +R + IPA++ YG + IP ++ L F+V+L
Sbjct: 300 KPFTFNLGLEEVIKGWDVGIVGMQVGGERTIHIPAAMAYGSKRLPG-IPANSDLVFDVKL 358
Query: 436 INI 444
+ +
Sbjct: 359 LAV 361
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 31.9 bits (69), Expect = 0.11
Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Frame = +3
Query: 570 SEDIKQMLESHDKLVEEIFQHED*RQKRLHQP*GIL--WDLSTTNFKMSLPKPLGIIRSQ 743
S ++ Q L H LV ++ +++ P L WDL+T + + L PLG I Q
Sbjct: 648 SGELLQTLHGHSNLVSQVTFNQNILVSASAPPDTSLRVWDLNTGSCRDILKCPLGHIFFQ 707
Query: 744 HFYTKILALSH 776
H +K+++ SH
Sbjct: 708 HDESKVVSGSH 718
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 29.1 bits (62), Expect = 0.78
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -1
Query: 423 EMQCSVGRNHVAGSALSVAQGCGNSQFTFLTNAHVKQALVPSL 295
++ ++GR H+AG + GC Q +FL+ V ++ SL
Sbjct: 996 QLSYNLGRLHIAGDYIFSCVGCRTLQRSFLSGLSVCTGIIDSL 1038
>SPBC21C3.09c |||fumarylacetoacetate |Schizosaccharomyces pombe|chr
2|||Manual
Length = 221
Score = 27.1 bits (57), Expect = 3.2
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 376 ERGAGN-VIPPHATLHFEVEL 435
E G GN +IPP + H+EVEL
Sbjct: 42 EPGHGNLIIPPDVSAHYEVEL 62
>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 312
Score = 26.6 bits (56), Expect = 4.2
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = +3
Query: 57 RRCAACLCWLPWPGPRSRV 113
R C C CWLP SRV
Sbjct: 113 RMCGTCKCWLPDRSHHSRV 131
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 26.6 bits (56), Expect = 4.2
Identities = 12/47 (25%), Positives = 28/47 (59%)
Frame = +3
Query: 513 EEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHED*RQKR 653
+E+S+++ ++ + +D E +D K + EE+ Q+E+ R+K+
Sbjct: 419 QEISNHVAEEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQ 465
>SPAC13G6.12c |chs1|SPAC24B11.01c|chitin synthase
I|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 25.8 bits (54), Expect = 7.3
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = +1
Query: 373 GERGAGNVIPPHATLHFEVELINIGDSP 456
G+ G+G + P AT +FE ++ NI D P
Sbjct: 376 GKLGSGLINPLVATQNFEYKMSNILDKP 403
>SPBC3D6.07 |gpi3||pig-A|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 25.8 bits (54), Expect = 7.3
Identities = 39/146 (26%), Positives = 58/146 (39%), Gaps = 12/146 (8%)
Frame = +2
Query: 104 FAGPEVTELKTEVVSV-----PEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRV---- 256
FA PE +L + SV T++ H ++ M+ +D + + YD +
Sbjct: 312 FARPEEDDLADTLSSVITDYLDHKIKTETFHEEVKQMY--SWIDVAERTEKVYDSICSEN 369
Query: 257 NLL---RSKLALGK*SRDGTRACLTCALVRNVN*LFPHPWATESAEPAT*FLPTLHCISK 427
NL R KL G G CL A+ V L W +PA + + ISK
Sbjct: 370 NLRLIDRLKLYYGCGQWAGKLFCLLIAIDYLVMVLLEWIWPASDIDPAVDRVSSTFKISK 429
Query: 428 WS*STSVTLHRPQTCSRKSTPIRTTC 505
+ S+ L P +K T I+T C
Sbjct: 430 QNFDESLVLTDP----KKKTKIKTAC 451
>SPAC1002.02 |mug31||nucleoporin Pom34 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 229
Score = 25.8 bits (54), Expect = 7.3
Identities = 10/27 (37%), Positives = 18/27 (66%)
Frame = +2
Query: 101 TFAGPEVTELKTEVVSVPEGCTTKSKH 181
TF ++T L+ +++ +PEG +T KH
Sbjct: 174 TFDDLQLTPLQRKLMGLPEGGSTSGKH 200
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 25.8 bits (54), Expect = 7.3
Identities = 20/62 (32%), Positives = 29/62 (46%)
Frame = -2
Query: 527 VAHFFAESMLSLSASISLNTFVAGGESPMLINSTSKCNVAWGGITLPAPRSP*PKDAGIV 348
V HF + +LSA++SL T V L +ST +W G + P+ P G V
Sbjct: 459 VEHFKLRKITALSAALSLGT-VLFCLHTFLCDSTVLMTWSWDGYPIKGPQ---PYPHGAV 514
Query: 347 SL 342
S+
Sbjct: 515 SI 516
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,496
Number of Sequences: 5004
Number of extensions: 68307
Number of successful extensions: 202
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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