Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30914
         (810 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)                      108   5e-24
SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   7e-19
SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.9  
SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)                 29   5.9  
SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)                   28   7.8  

>SB_8342| Best HMM Match : FKBP_C (HMM E-Value=0)
          Length = 266

 Score =  108 bits (260), Expect = 5e-24
 Identities = 50/87 (57%), Positives = 62/87 (71%), Gaps = 1/87 (1%)
 Frame = +1

Query: 262 FTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGAGNVIPPHATLHFEVELIN 441
           F F +G G VI+GW+QGLLDMC+GEKRKLTIP  L YGE GAG  IPPHATL+ +VEL+ 
Sbjct: 72  FDFTLGKGMVIQGWEQGLLDMCIGEKRKLTIPPHLAYGENGAGAAIPPHATLYMDVELVE 131

Query: 442 I-GDSPPATNVFKEIDADKDNMLSAKK 519
           I G      NVF  ID + D +L+ ++
Sbjct: 132 IQGSKESDPNVFGMIDKNNDKVLTQEE 158



 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 36/68 (52%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
 Frame = +2

Query: 53  MTTLRCVLMLVALAGATFAGPEVT-ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGH 229
           M  L  +L +VA +G      E   ELK EVVS PE CT K+  GD L+MHYTG L +G+
Sbjct: 1   MKGLMNLLAIVAFSGLALGAEEPKGELKIEVVSKPEKCTRKTHVGDTLSMHYTGRLANGN 60

Query: 230 KFDSSYDR 253
           KFDSS DR
Sbjct: 61  KFDSSLDR 68



 Score = 33.1 bits (72), Expect = 0.27
 Identities = 21/43 (48%), Positives = 26/43 (60%)
 Frame = +3

Query: 510 REEVSDYLKKQMVPADGGEVSEDIKQMLESHDKLVEEIFQHED 638
           +EEV +YLK+Q     GG  S+D      SHD +V EIFQ ED
Sbjct: 156 QEEVKNYLKEQ-----GGMPSDDEA----SHDTIVSEIFQQED 189


>SB_19729| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 299

 Score = 91.5 bits (217), Expect = 7e-19
 Identities = 53/147 (36%), Positives = 85/147 (57%), Gaps = 5/147 (3%)
 Frame = +1

Query: 256 QPFTFQIGVGQVIKGWDQGLLDMCVGEKRKLTIPASLGYGERGA----GNVIPPHATLHF 423
           QPF F IG G VIKG++QG+  MCVG+KRK+ IP +L YG++G+    GN+   + TL +
Sbjct: 146 QPFEFTIGGGTVIKGFEQGVTGMCVGQKRKIVIPPALAYGKKGSGDVPGNLDLTNTTLTY 205

Query: 424 EVELINIGDSPPATNVFKEIDADKDNMLSAKK*ATI*RSRWFPPTVVK*AKTSSKCWK-V 600
            +EL ++   PP +++F  +D + D  LS ++ +   R +       + A T  + W+  
Sbjct: 206 NLELFDVRKPPPHSDMFSHMDENGDRKLSREEVSAYMRKQ----AEAQFAPTYDQRWQHH 261

Query: 601 TINLLRKSSSTKIKDKNGFISHEEFSG 681
              ++      +  D++G ISHEEFSG
Sbjct: 262 HERMVDNVFEYEDHDEDGHISHEEFSG 288



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 26/42 (61%)
 Frame = +2

Query: 125 ELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYD 250
           +++ E   VP  C  K+K GD + +HYTG + DG  FD++ D
Sbjct: 99  KIEVEETFVPSDCENKTKVGDHVVVHYTGWMQDGSLFDTTRD 140


>SB_51467| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 465

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -1

Query: 519 LLRGEHVVLIGVDFLEHVCGRWRVTDVDQLHFEMQCSVGRNHVAGSAL 376
           L+  E V+ + V  +E V  R  + DV QLH + + S+GR  V+   L
Sbjct: 177 LIERESVIAVRVHLVECVWFRLPILDVQQLHVKYERSLGRELVSNLLL 224


>SB_16681| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 352

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 113 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRVN 259
           P  T  K +++  P+G  TK +HG++ T+ +     DG+      D  N
Sbjct: 51  PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGNVITLVNDAAN 97


>SB_20840| Best HMM Match : Rota_NS26 (HMM E-Value=4.2)
          Length = 466

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/49 (28%), Positives = 24/49 (48%)
 Frame = +2

Query: 113 PEVTELKTEVVSVPEGCTTKSKHGDMLTMHYTGTLDDGHKFDSSYDRVN 259
           P  T  K +++  P+G  TK +HG++ T+ +     DG+      D  N
Sbjct: 165 PTHTTFKPDLIETPKG--TKQRHGNVKTVEFKVVEQDGNVITLVNDAAN 211


>SB_13421| Best HMM Match : Harpin (HMM E-Value=0.62)
          Length = 375

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/28 (39%), Positives = 13/28 (46%)
 Frame = -2

Query: 368 PKDAGIVSLRFSPTHMSSKPWSHPLITC 285
           PK  G  S      H SS  W HP ++C
Sbjct: 257 PKSHGAASPSLMGQHFSSLMWQHPQVSC 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,950,282
Number of Sequences: 59808
Number of extensions: 545577
Number of successful extensions: 1252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1246
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2251677692
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)