Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30913
         (691 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|c...    27   3.4  
SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|ch...    26   4.5  
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   7.8  

>SPBC428.11 |||homocysteine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 429

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 19/63 (30%), Positives = 28/63 (44%)
 Frame = +1

Query: 58  YCDVDFSERPRNFSIELLYHTQTQTDGHVVISPFGIWTLMTGIALGASGNSYRQLSRAFI 237
           Y  + F+E   N +      TQT  D     +PFG++ L+ G+    S    R +  AF 
Sbjct: 248 YHGMVFTETFGNLAYAFACRTQTLRDVGGNANPFGVFLLLQGLET-LSLRMERHVQNAFA 306

Query: 238 LPK 246
           L K
Sbjct: 307 LAK 309


>SPBC25H2.11c |||bromodomain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -2

Query: 516 GSSQSAERSRRVPRIFRCRCWLFE 445
           GS+   E    +  +FRCRC +F+
Sbjct: 71  GSNDDEEDDLDITTLFRCRCMIFD 94


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +2

Query: 5   ISAGCIQSRSFFFSSARVIVMSISAR 82
           IS+ C+Q +SFF  +AR  + S+ +R
Sbjct: 158 ISSICMQVQSFFSPAAREAISSLKSR 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,294
Number of Sequences: 5004
Number of extensions: 61367
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)