Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30913
(691 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0619 + 26652923-26653267,26653440-26654273 49 4e-06
11_01_0767 + 6438648-6438809,6439146-6440000 43 2e-04
11_01_0771 + 6453130-6454488 39 9e-04
01_01_1152 + 9170628-9171899 40 0.001
11_01_0532 + 4201374-4201401,4201475-4202652,4204316-4204670,420... 31 1.1
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565... 29 2.6
08_01_1061 - 10804269-10804352,10804464-10804593,10804696-108047... 29 3.5
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 28 6.1
02_05_0183 + 26537676-26537752,26538481-26538649,26538736-265389... 28 6.1
12_01_0676 + 5765154-5765241,5765329-5765453,5765533-5765604,576... 28 8.0
03_05_0293 + 22849103-22849513,22849670-22849756,22850156-228502... 28 8.0
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 48.8 bits (111), Expect = 4e-06
Identities = 29/99 (29%), Positives = 50/99 (50%), Gaps = 4/99 (4%)
Frame = +3
Query: 339 VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDPNSARIA--NTYI-EKSGGRVSNVLRSE 509
+F+D L P F++T GA + +DF + +A A N +I + + GR++N +
Sbjct: 83 IFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNNTISPG 142
Query: 510 NFQES-RLILTNVISFKGLWGLPFNKF*TTELEPFYNED 623
F S + +L N + FK WG F + T+ F+ +D
Sbjct: 143 TFGSSTKCVLANAMHFKATWGRKFESY-DTQRRRFHRQD 180
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/111 (29%), Positives = 57/111 (51%), Gaps = 5/111 (4%)
Frame = +3
Query: 288 VVLDQTANGVSLVSRNF-VFLDNDFTLLPAFRTTLQKDFGASIKVLDFSD-PNSARIA-N 458
V+ DQ G VS +LD ++L PA+R + + + +DF + P AR N
Sbjct: 4 VLADQAPTGGPCVSFACGSWLDASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEIN 63
Query: 459 TYIEKSGGR-VSNVLRSENFQ-ESRLILTNVISFKGLWGLPFNKF*TTELE 605
++ ++ ++ V++ E+ ++R ++ N I FKG W PF+K T E E
Sbjct: 64 AWVARATKNLITEVIKPESQSVDTRHVVGNAIYFKGEWLAPFDKSDTAERE 114
>11_01_0771 + 6453130-6454488
Length = 452
Score = 38.7 bits (86), Expect(2) = 9e-04
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +3
Query: 456 NTYIEKSGGR-VSNVLRSENF-QESRLILTNVISFKGLWGLPFNKF*TTELEPFYNED 623
N + ++ G+ +++VL + E+ ++L N I FKG W PFN+ TE +PFY D
Sbjct: 178 NAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNES-DTERKPFYRHD 234
Score = 21.4 bits (43), Expect(2) = 9e-04
Identities = 7/22 (31%), Positives = 13/22 (59%)
Frame = +3
Query: 369 PAFRTTLQKDFGASIKVLDFSD 434
PA+R + ++ A V+DF +
Sbjct: 117 PAYRAAVAAEYNAEATVVDFKN 138
>01_01_1152 + 9170628-9171899
Length = 423
Score = 40.3 bits (90), Expect = 0.001
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 4/116 (3%)
Frame = +3
Query: 339 VFLDNDFTLLPAFRTTLQKDFGASIKVLDFS-DPNSARI-ANTYI-EKSGGRVSNVLRSE 509
V++D L P F + A + DF+ P AR N ++ + + G + +VL
Sbjct: 123 VWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEGLIRDVLPPN 182
Query: 510 NFQESRLI-LTNVISFKGLWGLPFNKF*TTELEPFYNEDRLVIGSVKMMYQKGAVP 674
+ S ++ L N + FKG W LPF+ T PF+ D G+V+ + +P
Sbjct: 183 SVDSSTVVVLANAVHFKGTWSLPFHPS-ATFHAPFHLLDG---GAVRAPFMTTEIP 234
>11_01_0532 +
4201374-4201401,4201475-4202652,4204316-4204670,
4204791-4204864,4206965-4207056,4207500-4207573,
4207680-4207822,4207889-4207909
Length = 654
Score = 30.7 bits (66), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 189 SDSRHQSPYPKRRDHNVPISLSL 121
SDSR Q P+P RDHN +S S+
Sbjct: 584 SDSRGQGPHPNFRDHNGGVSSSI 606
>08_01_0656 +
5652383-5653009,5653260-5653736,5654969-5655289,
5655434-5655589,5656062-5656127,5656196-5656315
Length = 588
Score = 29.5 bits (63), Expect = 2.6
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 354 RCPRRQSSD*PGILRSRSDRAPRPSGICTLRSACRIFGQNK 232
+CPRR+ S G ++ AP P+ CT ++CR G+ +
Sbjct: 5 KCPRRKPSRPAGAALRKTGSAPSPTRSCT--TSCRSCGRGR 43
>08_01_1061 -
10804269-10804352,10804464-10804593,10804696-10804745,
10805154-10805216,10806235-10806375,10806541-10806925,
10807735-10808339
Length = 485
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = -1
Query: 415 LIEAPKSFWSVVLKAGNKVKSLSKKTKFRL-TRDTPFAV*SSTTSVRDLYPSI 260
++E S SV + G+ +K + ++TKFRL + D P+ S SV +P++
Sbjct: 319 VVEVGVSTSSVPITYGSAIKLMHERTKFRLHSHDVPYGSGSGQQSVTS-FPNV 370
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = -2
Query: 348 PRRQSSD*PGILRSRSDRAPRPSGICTLRSACRIFGQNKRSAQLPVA 208
P + +SD P I R ++ P PS C + AC N ++ LP +
Sbjct: 378 PNQYNSDPPDIDRLIANLCPSPSPQCQMPQACSSESGNADASVLPAS 424
>02_05_0183 +
26537676-26537752,26538481-26538649,26538736-26538910,
26539008-26539137,26540425-26540558,26540629-26540771,
26540894-26541092,26541183-26541514
Length = 452
Score = 28.3 bits (60), Expect = 6.1
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = -3
Query: 380 PEGRQQGEIVVQEDKVPTDQGYSV---RGLIEHHVRQGFVPFDQRAGFLGK 237
PE R GE++ +DK P+ +G V + ++E HV +G + Q+ F G+
Sbjct: 223 PECRGSGEMISDKDKCPSCKGNKVVQQKKVLEVHVEKG-MQHGQKIVFQGE 272
>12_01_0676 +
5765154-5765241,5765329-5765453,5765533-5765604,
5765728-5765802,5765880-5765905,5766709-5766870,
5766963-5767037,5767133-5767204,5767289-5767363,
5767461-5767529,5767839-5767910,5768030-5768161,
5768430-5768920,5769315-5769476,5769570-5769709,
5769818-5770037,5770398-5770633,5771560-5772051
Length = 927
Score = 27.9 bits (59), Expect = 8.0
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 391 WSVVLKAGNKVKSLSKKTKFRLTRD 317
W ++ GN+V S+ K KFR RD
Sbjct: 57 WIGIICTGNRVTSMLKTVKFRTVRD 81
>03_05_0293 +
22849103-22849513,22849670-22849756,22850156-22850284,
22850507-22851262,22853474-22854250
Length = 719
Score = 27.9 bits (59), Expect = 8.0
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 456 NTYIEK-SGGRVSNVLRSENFQES-RLILTNVISFKGLWGLPFN 581
N+++EK + G + +L + + RL+L N + FKG W F+
Sbjct: 218 NSWVEKVTSGLIKEILPPGSVDHTTRLVLGNALYFKGAWTEKFD 261
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,671,243
Number of Sequences: 37544
Number of extensions: 403044
Number of successful extensions: 1001
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1000
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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