Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30913
(691 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55238| Best HMM Match : Serpin (HMM E-Value=0) 50 2e-06
SB_38975| Best HMM Match : Serpin (HMM E-Value=0) 44 1e-04
SB_14712| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43) 30 1.5
SB_55237| Best HMM Match : Serpin (HMM E-Value=0) 30 2.0
SB_50290| Best HMM Match : MFS_1 (HMM E-Value=2.2e-18) 29 2.7
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_8850| Best HMM Match : LIM (HMM E-Value=0.51) 29 3.6
SB_21791| Best HMM Match : V-set (HMM E-Value=1.4) 28 6.2
SB_48518| Best HMM Match : Kelch_1 (HMM E-Value=0) 28 8.2
SB_42197| Best HMM Match : rve (HMM E-Value=0.017) 28 8.2
SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.2
>SB_55238| Best HMM Match : Serpin (HMM E-Value=0)
Length = 345
Score = 49.6 bits (113), Expect = 2e-06
Identities = 37/114 (32%), Positives = 59/114 (51%), Gaps = 4/114 (3%)
Frame = +3
Query: 333 NFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF-SDPNSARI-ANTYIE-KSGGRVSNVLR 503
N +FL DF++L F QK + A I ++D+ +D AR N ++E ++ ++ +++
Sbjct: 54 NNLFLQKDFSILKEFTDICQKYYDADISLVDYKTDFEGARKHVNQWVEERTKKKICDLIA 113
Query: 504 SENFQE-SRLILTNVISFKGLWGLPFNKF*TTELEPFYNEDRLVIGSVKMMYQK 662
F +RL L N I FKG+W PF K + E V V+MM+QK
Sbjct: 114 PGVFNMLTRLTLVNAIYFKGMWDKPFKKEHSHSSEFRTTSSNEV--EVEMMFQK 165
>SB_38975| Best HMM Match : Serpin (HMM E-Value=0)
Length = 380
Score = 44.0 bits (99), Expect = 1e-04
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Frame = +3
Query: 306 ANGVSLVSRNFVFLDNDFTLLPAFRTTLQKDFGASIKVLDF-SDPNSAR-IANTYIE-KS 476
++G ++ N +F F +L F+ ++ F A + ++D+ + N AR N ++E K+
Sbjct: 82 SDGNQILMANRLFAQMGFEILEEFKKASKESFSAEMALVDYVKNSNGARDTVNRWVEQKT 141
Query: 477 GGRVSNVLRSENFQESRLI-LTNVISFKGLWGLPFNK 584
++ N++ F + ++ L N + FKG W FN+
Sbjct: 142 KDKIKNLIPEGMFNKDTILCLVNAVYFKGSWMKHFNR 178
>SB_14712| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 30.7 bits (66), Expect = 1.2
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Frame = -1
Query: 298 SSTTSVRDLYPSISVPDFWAK*TLC-SAACSYYRTLLKRFPSSK-SISQTARSQRAHQSE 125
++TT V+DL PS + + T C S++ +Y + +PSS+ +S T + R H+
Sbjct: 103 TTTTVVKDLTPSPTTSNVKIDATTCPSSSITYKSSSYTVYPSSRYKLSLTGLAGRVHRFI 162
Query: 124 SAC 116
AC
Sbjct: 163 GAC 165
>SB_19407| Best HMM Match : SURF6 (HMM E-Value=0.43)
Length = 443
Score = 30.3 bits (65), Expect = 1.5
Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
Frame = +1
Query: 163 IWTLMTGIALGASGNSYRQLSRAFILPKNPAR*SKGTNP*RTWCSIRP-----RTEYPWS 327
IW L G+ A RQ +++ K + K +NP R+ CS+ +T Y W
Sbjct: 377 IWRLRAGVLQAAEMKKKRQKAQSLAERKKIKKEKKKSNPRRSKCSVPGLSCFYQTNYHWK 436
Query: 328 VGTLSSWT 351
V L WT
Sbjct: 437 VPPL--WT 442
>SB_55237| Best HMM Match : Serpin (HMM E-Value=0)
Length = 363
Score = 29.9 bits (64), Expect = 2.0
Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 4/114 (3%)
Frame = +3
Query: 333 NFVFLDNDFTLLPAFRTTLQKDFGASIKVLDFSDP--NSARIANTYI-EKSGGRVSNVLR 503
N ++ ++F +L F ++ + + + +DF + ++ + N ++ +++ G + ++
Sbjct: 59 NKIWGHDEFEILEEFLHGTREFYHSEMAQVDFVNKAFDARKEVNAWVHQQTKGNIKELIP 118
Query: 504 SENFQE-SRLILTNVISFKGLWGLPFNKF*TTELEPFYNEDRLVIGSVKMMYQK 662
+RLI+ N + FKG+W F + T F E V+MM +K
Sbjct: 119 HGVINSLTRLIIVNAVYFKGVWKKEFGEENTFHAAFFVPESHESKIEVEMMTRK 172
>SB_50290| Best HMM Match : MFS_1 (HMM E-Value=2.2e-18)
Length = 534
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -3
Query: 443 RIRVAEVKHFNRSTEILLERRPEGRQQGEIVVQEDKVPT 327
RI + KH + E+L +RP G + QE VP+
Sbjct: 101 RISTEQGKHLDTPLEVLFHQRPGHHLTGHVFYQESPVPS 139
>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1488
Score = 29.1 bits (62), Expect = 3.6
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 252 RIFGQNKRSAQLPVAITGRS*SDSRHQSPYPKRRDHNVPIS 130
R FG NK QL + TG S ++ P P RR+H +P++
Sbjct: 1432 RAFGVNK---QLYTSPTGESLGVNKQLHPSPHRREHFMPVN 1469
>SB_8850| Best HMM Match : LIM (HMM E-Value=0.51)
Length = 1039
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 105 FNAKIPWSLAEIDITITRADEKKN 34
FN ++PWS IT+TR D K +
Sbjct: 15 FNERVPWSSYCFPITVTRKDRKND 38
>SB_21791| Best HMM Match : V-set (HMM E-Value=1.4)
Length = 474
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/28 (39%), Positives = 19/28 (67%)
Frame = -1
Query: 571 NPQRPLKDITLVSINLDSWKFSERRTFE 488
NP+ PL+D T+ ++L + S+ RTF+
Sbjct: 172 NPRSPLEDYTIHIVDLRKGRLSDSRTFK 199
>SB_48518| Best HMM Match : Kelch_1 (HMM E-Value=0)
Length = 481
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -3
Query: 635 YYQSVFIIEGLQFGCSEFVERQ 570
Y S+F + +Q CSEF+ERQ
Sbjct: 122 YASSLFQLNAIQKACSEFLERQ 143
>SB_42197| Best HMM Match : rve (HMM E-Value=0.017)
Length = 602
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 527 IDTNQRDILQRPLGIAVQQILNNRTG 604
IDTN+RDI QR L A++ LN TG
Sbjct: 240 IDTNKRDIFQRQLDSALEG-LNGVTG 264
>SB_24190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 202
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/51 (31%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Frame = +1
Query: 19 YSIAFVLFFVGACYC-DVDFSERPRNFSIELLYHTQTQTDGHVVISPFGIW 168
Y VLFF D F E P + + Y TD HV + P +W
Sbjct: 78 YYRLIVLFFAAINNSSDTSFLELPPSLPEPIAYFRLDGTDQHVTVLPLSMW 128
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,646,330
Number of Sequences: 59808
Number of extensions: 457985
Number of successful extensions: 1118
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1063
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1793485733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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