Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30912
         (567 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   2.1  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   6.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.5  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   8.6  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 388 TLITNPEYSSKYLR 429
           T I N  YSSKY+R
Sbjct: 199 TYIVNTNYSSKYMR 212


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 8/34 (23%), Positives = 20/34 (58%)
 Frame = -2

Query: 152  SCRSFCTLVDTSGATHQYNIVDLSLIHLGITERL 51
            SC S CT V+T    ++++ ++ +   + + +R+
Sbjct: 1710 SCASGCTAVETKSKPYKFHCMEKNEAAMKLKKRI 1743


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -3

Query: 505 PRGAGGIPVS 476
           PRG GG+P S
Sbjct: 399 PRGPGGVPTS 408


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 343  VTLPSPLNRLRHSPP 387
            +T PSP  R R++PP
Sbjct: 986  MTDPSPFKRGRYTPP 1000


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 413 EYSGLVIRVGGECLSLFSGDGSVTLDECGH 324
           E+ G+   +G   ++L SG+    LD  GH
Sbjct: 174 EFGGITQCIGAFDVTLESGERVTFLDTPGH 203


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,090
Number of Sequences: 438
Number of extensions: 3486
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16440594
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)