Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30911
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    25   0.41 
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    24   0.94 
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.2  
AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase l...    22   3.8  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   6.7  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 25.4 bits (53), Expect = 0.41
 Identities = 11/36 (30%), Positives = 17/36 (47%)
 Frame = +3

Query: 414 EIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALG 521
           E+ D+  D  R + +     PG  +  S GGG  +G
Sbjct: 72  ELFDVTRDNYRHITELKRRFPGLRVLLSVGGGEDIG 107



 Score = 22.6 bits (46), Expect = 2.9
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +3

Query: 381 NYARGHYTIGKEIVDLVLDRIRKLADQCTG 470
           +YAR     G  IVD+ LD  R L   CTG
Sbjct: 392 SYARAKGLGGIAIVDITLDDFRGL---CTG 418


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +3

Query: 189 HRQDHRGWRRFFQHFLQRDRSWKHVPR 269
           +R++ +GW+   +H L  ++ +  VPR
Sbjct: 120 YRENKQGWQNSIRHNLSLNKCFVKVPR 146


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 9/27 (33%), Positives = 11/27 (40%)
 Frame = -1

Query: 456 QRACGFCPKPNLRFPFQWCSDHGHSCW 376
           Q  C +   PN       C+D   SCW
Sbjct: 15  QLECNWSSGPNATLQSSACTDDLSSCW 41


>AF260822-1|AAG02020.1|  138|Tribolium castaneum alpha-esterase like
           protein E3 protein.
          Length = 138

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = -3

Query: 520 PRAGPPPKEWKIRNPGRPVHWSASL 446
           P A PP    + + P  P HW   L
Sbjct: 5   PYAKPPLGHLRFKAPELPEHWEGVL 29


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 202 IGGGDDSFNTFFSETGAGSTY 264
           +GGGD S N+      A  TY
Sbjct: 112 LGGGDTSPNSALQRARADKTY 132



 Score = 21.0 bits (42), Expect = 8.8
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +3

Query: 189 HRQDHRGWRRFFQHFLQRDRSWKHVPR 269
           +RQ+ + W+   +H L  +  +  VPR
Sbjct: 177 YRQNQQRWQNSIRHSLSFNDCFVKVPR 203


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,373
Number of Sequences: 336
Number of extensions: 4057
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)