BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30911 (651 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 161 8e-41 SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 155 4e-39 SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 99 3e-22 SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 72 8e-14 SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 28 1.0 SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.3 SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.1 SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 4.1 SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.4 SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.4 SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 9.5 >SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 161 bits (391), Expect = 8e-41 Identities = 69/105 (65%), Positives = 84/105 (80%) Frame = +3 Query: 222 FQHFLQRDRSWKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 401 F F K+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108 Query: 402 TIGKEIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALGFTCLI 536 T+GKE+VD V D+IR++AD C+GL GFL+FHSFGGG GF L+ Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALL 153 Score = 70.9 bits (166), Expect = 1e-13 Identities = 30/50 (60%), Positives = 34/50 (68%) Frame = +1 Query: 118 SQIGNACWELYCPEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGSTYP 267 +QIGNACWELYC EHGIQP+G M + D F+TFFSETG G P Sbjct: 14 TQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVP 63 >SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr 2|||Manual Length = 455 Score = 155 bits (377), Expect = 4e-39 Identities = 65/105 (61%), Positives = 83/105 (79%) Frame = +3 Query: 222 FQHFLQRDRSWKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 401 F F K VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112 Query: 402 TIGKEIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALGFTCLI 536 T+GKE++D VL+RIR++AD C+GL GFL+FHSFGGG G L+ Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALL 157 Score = 62.5 bits (145), Expect = 5e-11 Identities = 32/54 (59%), Positives = 34/54 (62%), Gaps = 5/54 (9%) Frame = +1 Query: 121 QIGNACWELYCPEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSETGAGSTYP 267 QIGNACWELYC EHGI PDG PT+ K +D F TFFSETG G P Sbjct: 15 QIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQGKFVP 67 >SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces pombe|chr 2|||Manual Length = 448 Score = 99 bits (238), Expect = 3e-22 Identities = 45/94 (47%), Positives = 61/94 (64%) Frame = +3 Query: 255 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 434 K+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VL Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117 Query: 435 DRIRKLADQCTGLPGFLIFHSFGGGPALGFTCLI 536 D +R+ A+ C L GF + HS GGG G L+ Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSGMGTLL 151 Score = 27.1 bits (57), Expect = 2.3 Identities = 14/50 (28%), Positives = 20/50 (40%) Frame = +1 Query: 118 SQIGNACWELYCPEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGSTYP 267 +Q+G A W EHG+ G T + N +F+E G P Sbjct: 14 NQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGKYVP 61 >SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr 2|||Manual Length = 446 Score = 71.7 bits (168), Expect = 8e-14 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 2/99 (2%) Frame = +3 Query: 231 FLQRDRSWKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 404 F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+ Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109 Query: 405 IGKEIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALG 521 + I + ++D I + AD L GF + HS GG G Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSG 148 Score = 34.7 bits (76), Expect = 0.012 Identities = 17/43 (39%), Positives = 25/43 (58%) Frame = +1 Query: 118 SQIGNACWELYCPEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 246 +QIG+ W+ C EHGI PDG + + T G D + FF ++ Sbjct: 15 NQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55 >SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosaccharomyces pombe|chr 1|||Manual Length = 990 Score = 28.3 bits (60), Expect = 1.0 Identities = 12/28 (42%), Positives = 16/28 (57%) Frame = -3 Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107 WA G + A GS+ P+ + S TPAW Sbjct: 812 WAQGARTPAVANGSRTPAWNTGSRTPAW 839 Score = 25.8 bits (54), Expect = 5.4 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107 W +G + GSK P+ + S TPAW Sbjct: 830 WNTGSRTPAWNSGSKTPAWNSGSRTPAW 857 Score = 25.8 bits (54), Expect = 5.4 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107 W SG + G+K P+ + S TPAW Sbjct: 848 WNSGSRTPAWNSGNKTPAWNAGSRTPAW 875 Score = 25.4 bits (53), Expect = 7.2 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = -3 Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107 W SG++ GS+ P+ + + TPAW Sbjct: 857 WNSGNKTPAWNAGSRTPAWNSGNKTPAW 884 Score = 25.4 bits (53), Expect = 7.2 Identities = 11/28 (39%), Positives = 15/28 (53%) Frame = -3 Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107 W SG + G+K PS + + TPAW Sbjct: 893 WNSGAKTPAWNAGNKTPSWNNGTKTPAW 920 Score = 25.0 bits (52), Expect = 9.5 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = -3 Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107 W SG++ G+K P+ + + TPAW Sbjct: 875 WNSGNKTPAWNVGNKTPAWNSGAKTPAW 902 >SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr 3|||Manual Length = 1024 Score = 27.9 bits (59), Expect = 1.3 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%) Frame = -2 Query: 314 ADLINNSRFKIDEDS--TGYVLPAPVSLKKVLKESSP 210 AD+IN SR+ ID S T + P+SL KE P Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491 >SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 534 Score = 26.2 bits (55), Expect = 4.1 Identities = 20/52 (38%), Positives = 26/52 (50%) Frame = +2 Query: 92 SVHVGPSRSPRSVMPAGSFTARSTASSLMARCPQTRPSGVETILSTLSSARP 247 S V S S S+ + T+ ST SSL + ++PS T ST SSA P Sbjct: 152 STSVEVSISSSSLSSSDPLTS-STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202 >SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 399 Score = 26.2 bits (55), Expect = 4.1 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%) Frame = -2 Query: 347 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIW 180 F + + S +++N+ + KID GY S K + E + P + G+W Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262 >SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr 3|||Manual Length = 1275 Score = 25.8 bits (54), Expect = 5.4 Identities = 13/22 (59%), Positives = 13/22 (59%) Frame = +3 Query: 177 WPDAHRQDHRGWRRFFQHFLQR 242 W A R D R R FQHFLQR Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611 >SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces pombe|chr 1|||Manual Length = 1067 Score = 25.8 bits (54), Expect = 5.4 Identities = 12/37 (32%), Positives = 23/37 (62%) Frame = -2 Query: 281 DEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSG 171 ++D T Y+ P P+ + L +++PP +V+ +G P G Sbjct: 834 EKDLTKYLGP-PIYTSQRLYDTTPPGVVMGLGWTPMG 869 >SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 830 Score = 25.0 bits (52), Expect = 9.5 Identities = 12/33 (36%), Positives = 21/33 (63%) Frame = -2 Query: 527 SEPQSRSSTEGVEDQESWQTGTLVSELADSVQN 429 S+ +SRSS+ G + Q S Q+GT ++D ++ Sbjct: 111 SQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,916,029 Number of Sequences: 5004 Number of extensions: 65416 Number of successful extensions: 209 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 187 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 207 length of database: 2,362,478 effective HSP length: 70 effective length of database: 2,012,198 effective search space used: 293780908 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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