Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30911
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 161 8e-41
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 155 4e-39
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 99 3e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 72 8e-14
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 28 1.0
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 28 1.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.1
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po... 26 4.1
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 5.4
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 26 5.4
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe... 25 9.5
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 161 bits (391), Expect = 8e-41
Identities = 69/105 (65%), Positives = 84/105 (80%)
Frame = +3
Query: 222 FQHFLQRDRSWKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 401
F F K+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49 FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108
Query: 402 TIGKEIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALGFTCLI 536
T+GKE+VD V D+IR++AD C+GL GFL+FHSFGGG GF L+
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALL 153
Score = 70.9 bits (166), Expect = 1e-13
Identities = 30/50 (60%), Positives = 34/50 (68%)
Frame = +1
Query: 118 SQIGNACWELYCPEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGSTYP 267
+QIGNACWELYC EHGIQP+G M + D F+TFFSETG G P
Sbjct: 14 TQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVP 63
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 155 bits (377), Expect = 4e-39
Identities = 65/105 (61%), Positives = 83/105 (79%)
Frame = +3
Query: 222 FQHFLQRDRSWKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 401
F F K VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53 FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112
Query: 402 TIGKEIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALGFTCLI 536
T+GKE++D VL+RIR++AD C+GL GFL+FHSFGGG G L+
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALL 157
Score = 62.5 bits (145), Expect = 5e-11
Identities = 32/54 (59%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
Frame = +1
Query: 121 QIGNACWELYCPEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSETGAGSTYP 267
QIGNACWELYC EHGI PDG PT+ K +D F TFFSETG G P
Sbjct: 15 QIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQGKFVP 67
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 99 bits (238), Expect = 3e-22
Identities = 45/94 (47%), Positives = 61/94 (64%)
Frame = +3
Query: 255 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 434
K+VPRAV VDLEP +D V++G + LF P+ +I G+ A N +A+GHYT G E+ D VL
Sbjct: 58 KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117
Query: 435 DRIRKLADQCTGLPGFLIFHSFGGGPALGFTCLI 536
D +R+ A+ C L GF + HS GGG G L+
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSGMGTLL 151
Score = 27.1 bits (57), Expect = 2.3
Identities = 14/50 (28%), Positives = 20/50 (40%)
Frame = +1
Query: 118 SQIGNACWELYCPEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGSTYP 267
+Q+G A W EHG+ G T + N +F+E G P
Sbjct: 14 NQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGKYVP 61
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 71.7 bits (168), Expect = 8e-14
Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
Frame = +3
Query: 231 FLQRDRSWKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 404
F Q D + +++PRA+ +DLEP VV+ + + TY L++PE ++ K A NN+A G Y+
Sbjct: 52 FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109
Query: 405 IGKEIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALG 521
+ I + ++D I + AD L GF + HS GG G
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSG 148
Score = 34.7 bits (76), Expect = 0.012
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 118 SQIGNACWELYCPEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 246
+QIG+ W+ C EHGI PDG + + T G D + FF ++
Sbjct: 15 NQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 28.3 bits (60), Expect = 1.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -3
Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
WA G + A GS+ P+ + S TPAW
Sbjct: 812 WAQGARTPAVANGSRTPAWNTGSRTPAW 839
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
W +G + GSK P+ + S TPAW
Sbjct: 830 WNTGSRTPAWNSGSKTPAWNSGSRTPAW 857
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
W SG + G+K P+ + S TPAW
Sbjct: 848 WNSGSRTPAWNSGNKTPAWNAGSRTPAW 875
Score = 25.4 bits (53), Expect = 7.2
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
W SG++ GS+ P+ + + TPAW
Sbjct: 857 WNSGNKTPAWNAGSRTPAWNSGNKTPAW 884
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = -3
Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
W SG + G+K PS + + TPAW
Sbjct: 893 WNSGAKTPAWNAGNKTPSWNNGTKTPAW 920
Score = 25.0 bits (52), Expect = 9.5
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
W SG++ G+K P+ + + TPAW
Sbjct: 875 WNSGNKTPAWNVGNKTPAWNSGAKTPAW 902
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 27.9 bits (59), Expect = 1.3
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = -2
Query: 314 ADLINNSRFKIDEDS--TGYVLPAPVSLKKVLKESSP 210
AD+IN SR+ ID S T + P+SL KE P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.1
Identities = 20/52 (38%), Positives = 26/52 (50%)
Frame = +2
Query: 92 SVHVGPSRSPRSVMPAGSFTARSTASSLMARCPQTRPSGVETILSTLSSARP 247
S V S S S+ + T+ ST SSL + ++PS T ST SSA P
Sbjct: 152 STSVEVSISSSSLSSSDPLTS-STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202
>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 347 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIW 180
F + + S +++N+ + KID GY S K + E + P + G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = +3
Query: 177 WPDAHRQDHRGWRRFFQHFLQR 242
W A R D R R FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = -2
Query: 281 DEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSG 171
++D T Y+ P P+ + L +++PP +V+ +G P G
Sbjct: 834 EKDLTKYLGP-PIYTSQRLYDTTPPGVVMGLGWTPMG 869
>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 9.5
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -2
Query: 527 SEPQSRSSTEGVEDQESWQTGTLVSELADSVQN 429
S+ +SRSS+ G + Q S Q+GT ++D ++
Sbjct: 111 SQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,029
Number of Sequences: 5004
Number of extensions: 65416
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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