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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30911
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...   161   8e-41
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...   155   4e-39
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...    99   3e-22
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    72   8e-14
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    28   1.0  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    28   1.3  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.1  
SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces po...    26   4.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    26   5.4  
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce...    26   5.4  
SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces pombe...    25   9.5  

>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score =  161 bits (391), Expect = 8e-41
 Identities = 69/105 (65%), Positives = 84/105 (80%)
 Frame = +3

Query: 222 FQHFLQRDRSWKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 401
           F  F       K+VPR+++VDLEP V+D+VRTG YR LFHPEQLITGKEDA+NNYARGHY
Sbjct: 49  FSTFFSETGQGKYVPRSIYVDLEPNVIDQVRTGPYRDLFHPEQLITGKEDASNNYARGHY 108

Query: 402 TIGKEIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALGFTCLI 536
           T+GKE+VD V D+IR++AD C+GL GFL+FHSFGGG   GF  L+
Sbjct: 109 TVGKELVDEVTDKIRRIADNCSGLQGFLVFHSFGGGTGSGFGALL 153



 Score = 70.9 bits (166), Expect = 1e-13
 Identities = 30/50 (60%), Positives = 34/50 (68%)
 Frame = +1

Query: 118 SQIGNACWELYCPEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGSTYP 267
           +QIGNACWELYC EHGIQP+G M  +      D  F+TFFSETG G   P
Sbjct: 14  TQIGNACWELYCLEHGIQPNGYMNPETASQNSDGGFSTFFSETGQGKYVP 63


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score =  155 bits (377), Expect = 4e-39
 Identities = 65/105 (61%), Positives = 83/105 (79%)
 Frame = +3

Query: 222 FQHFLQRDRSWKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHY 401
           F  F       K VPR+++VDLEP V+D+VRTG Y+ LFHPEQ++TGKEDA+NNYARGHY
Sbjct: 53  FGTFFSETGQGKFVPRSIYVDLEPNVIDQVRTGPYKDLFHPEQMVTGKEDASNNYARGHY 112

Query: 402 TIGKEIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALGFTCLI 536
           T+GKE++D VL+RIR++AD C+GL GFL+FHSFGGG   G   L+
Sbjct: 113 TVGKEMIDSVLERIRRMADNCSGLQGFLVFHSFGGGTGSGLGALL 157



 Score = 62.5 bits (145), Expect = 5e-11
 Identities = 32/54 (59%), Positives = 34/54 (62%), Gaps = 5/54 (9%)
 Frame = +1

Query: 121 QIGNACWELYCPEHGIQPDGQMPTD-----KTIGGGDDSFNTFFSETGAGSTYP 267
           QIGNACWELYC EHGI PDG  PT+     K     +D F TFFSETG G   P
Sbjct: 15  QIGNACWELYCLEHGIGPDG-FPTENSEVHKNNSYLNDGFGTFFSETGQGKFVP 67


>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =   99 bits (238), Expect = 3e-22
 Identities = 45/94 (47%), Positives = 61/94 (64%)
 Frame = +3

Query: 255 KHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKEDAANNYARGHYTIGKEIVDLVL 434
           K+VPRAV VDLEP  +D V++G +  LF P+ +I G+  A N +A+GHYT G E+ D VL
Sbjct: 58  KYVPRAVLVDLEPGTMDAVKSGKFGNLFRPDNIIYGQSGAGNIWAKGHYTEGAELADAVL 117

Query: 435 DRIRKLADQCTGLPGFLIFHSFGGGPALGFTCLI 536
           D +R+ A+ C  L GF + HS GGG   G   L+
Sbjct: 118 DVVRREAEACDALQGFQLTHSLGGGTGSGMGTLL 151



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +1

Query: 118 SQIGNACWELYCPEHGIQPDGQMPTDKTIGGGDDSFNTFFSETGAGSTYP 267
           +Q+G A W     EHG+   G      T     +  N +F+E   G   P
Sbjct: 14  NQVGAAFWSTIADEHGLDSAGIY--HGTSEAQHERLNVYFNEAAGGKYVP 61


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 71.7 bits (168), Expect = 8e-14
 Identities = 37/99 (37%), Positives = 58/99 (58%), Gaps = 2/99 (2%)
 Frame = +3

Query: 231 FLQRDRSWKHVPRAVFVDLEPTVVDEVRTGTYRQLFHPEQLITGKE--DAANNYARGHYT 404
           F Q D + +++PRA+ +DLEP VV+ + + TY  L++PE ++  K    A NN+A G Y+
Sbjct: 52  FYQSDDT-RYIPRAILIDLEPRVVNNILSDTYGSLYNPENILITKNGGGAGNNWANG-YS 109

Query: 405 IGKEIVDLVLDRIRKLADQCTGLPGFLIFHSFGGGPALG 521
             + I + ++D I + AD    L GF + HS  GG   G
Sbjct: 110 HAERIFEDIMDMIDREADGSDSLEGFSLLHSIAGGTGSG 148



 Score = 34.7 bits (76), Expect = 0.012
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +1

Query: 118 SQIGNACWELYCPEHGIQPDGQMPTDKTIGGGDDSFNTFFSET 246
           +QIG+  W+  C EHGI PDG + +  T   G D  + FF ++
Sbjct: 15  NQIGSQFWQQLCLEHGIGPDGTLESFAT--EGVDRKDVFFYQS 55


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
           WA G +    A GS+ P+ +  S TPAW
Sbjct: 812 WAQGARTPAVANGSRTPAWNTGSRTPAW 839



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
           W +G +      GSK P+ +  S TPAW
Sbjct: 830 WNTGSRTPAWNSGSKTPAWNSGSRTPAW 857



 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
           W SG +      G+K P+ +  S TPAW
Sbjct: 848 WNSGSRTPAWNSGNKTPAWNAGSRTPAW 875



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
           W SG++      GS+ P+ +  + TPAW
Sbjct: 857 WNSGNKTPAWNAGSRTPAWNSGNKTPAW 884



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -3

Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
           W SG +      G+K PS +  + TPAW
Sbjct: 893 WNSGAKTPAWNAGNKTPSWNNGTKTPAW 920



 Score = 25.0 bits (52), Expect = 9.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 190 WASGHQAGCRAPGSKAPSRHYRSGTPAW 107
           W SG++      G+K P+ +  + TPAW
Sbjct: 875 WNSGNKTPAWNVGNKTPAWNSGAKTPAW 902


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = -2

Query: 314 ADLINNSRFKIDEDS--TGYVLPAPVSLKKVLKESSP 210
           AD+IN SR+ ID  S  T +    P+SL    KE  P
Sbjct: 455 ADIINGSRYNIDRVSPNTAFSTNIPLSLPFANKEPQP 491


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 20/52 (38%), Positives = 26/52 (50%)
 Frame = +2

Query: 92  SVHVGPSRSPRSVMPAGSFTARSTASSLMARCPQTRPSGVETILSTLSSARP 247
           S  V  S S  S+  +   T+ ST SSL +    ++PS   T  ST SSA P
Sbjct: 152 STSVEVSISSSSLSSSDPLTS-STFSSLSSSTSSSQPSVSSTSSSTFSSAAP 202


>SPBC354.07c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 399

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
 Frame = -2

Query: 347 FWMKQLSVCASADLINNSRF--KIDEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIW 180
           F    + +  S  +++N+ +  KID    GY      S K  + E +  P  +  G+W
Sbjct: 205 FMAPYIELYGSTYIVSNTNYITKIDYSGRGYFRGTKNSFKATIFEKNEDPDYIVEGVW 262


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 13/22 (59%), Positives = 13/22 (59%)
 Frame = +3

Query: 177 WPDAHRQDHRGWRRFFQHFLQR 242
           W  A R D R  R  FQHFLQR
Sbjct: 590 WLAACRSDPRCRRLDFQHFLQR 611


>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1067

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -2

Query: 281 DEDSTGYVLPAPVSLKKVLKESSPPPMVLSVGIWPSG 171
           ++D T Y+ P P+   + L +++PP +V+ +G  P G
Sbjct: 834 EKDLTKYLGP-PIYTSQRLYDTTPPGVVMGLGWTPMG 869


>SPAC16A10.01 |||DUF1212 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 830

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = -2

Query: 527 SEPQSRSSTEGVEDQESWQTGTLVSELADSVQN 429
           S+ +SRSS+ G + Q S Q+GT    ++D  ++
Sbjct: 111 SQSRSRSSSVGSDSQASIQSGTNSEVVSDDEED 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,029
Number of Sequences: 5004
Number of extensions: 65416
Number of successful extensions: 209
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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