Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30910
         (700 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    24   1.4  
EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate 1-deca...    23   2.4  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    22   5.5  
AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.           22   5.5  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   9.7  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 96  FSFNGIEGTETGRGRDSSNATQSKRSRV 179
           F    I G + GRG+D SNA   +   V
Sbjct: 552 FGGRDIRGDDFGRGQDFSNAAAVQEEEV 579


>EU019709-1|ABU25221.1|  540|Tribolium castaneum aspartate
           1-decarboxylase protein.
          Length = 540

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 294 WLHYPAAWSGAS 259
           WLH  AAW G +
Sbjct: 316 WLHVDAAWGGGA 327


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/25 (32%), Positives = 15/25 (60%)
 Frame = -3

Query: 332 EAEQLFGCLRQFNGYITLQPGLVHQ 258
           E  +L   L+++    +L+PGL H+
Sbjct: 269 EKRKLIHLLQEYRCIFSLRPGLTHK 293


>AY321476-2|AAQ23387.1|  257|Tribolium castaneum Ase protein.
          Length = 257

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 170 LAGNDIFQPHPQQRLRQSVRKEIM 241
           +AG  +  PH    L+Q+ R+EI+
Sbjct: 1   MAGVSVVSPHKINVLQQNDRREII 24


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +1

Query: 469 RAGIGQ*DSDTQTFPGAFASHKRGGCSRMQANCSSGKLQPRLK 597
           RAG  +  S+   FPG     KR     + +  + G+ +P+++
Sbjct: 111 RAGFSECASEVGRFPGLDPVVKRRLLQHLASCLNQGQKEPQVQ 153


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,300
Number of Sequences: 336
Number of extensions: 3843
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)