Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30910
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    29   0.64 
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.1  
SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    27   3.4  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    26   4.5  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    25   7.9  
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.9  
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    25   7.9  

>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = -1

Query: 187  NIVTRERFDWVAFDESR--PLPVSVPSMPLKLKVILVGERESL 65
            +I  + +FD+   DE+   PLP+ +  + L  K +LVG+   L
Sbjct: 1053 SIFNKRKFDYCIIDEASQIPLPICLGPLQLAEKFVLVGDHYQL 1095


>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1038

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 72  SRSPTRMTFSFNGIEGTETGRGRDSSNATQSKRSR 176
           +R+P +  FSF  +   ETG G + S AT S+ S+
Sbjct: 252 ARAPNKNRFSFASV--AETGSGSNFSRATSSRSSK 284


>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -3

Query: 638 PHLIDENDPLIQ*YFNRGCNLPLEQFACIREHPPLL 531
           PH+ D      Q +     NLP E+   IR HP L+
Sbjct: 2   PHMEDNGSEKEQLFLQHIQNLPQERLDAIRGHPELV 37


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = -3

Query: 680 LNTE*PIRKIFWLSPHLIDENDPLIQ*YFNRGCNLPLEQFACIREHPPLLWLAKAPGKV* 501
           +N E P  KI + +PH+ + N PL    FN       +  +CI +  PL  L   P  + 
Sbjct: 267 MNLETP--KIDYATPHIKESNTPLFTYNFNIS---GFDGDSCIEKFTPLDALGIKPSPID 321

Query: 500 VSESYCP 480
           V   + P
Sbjct: 322 VDAHFQP 328


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -1

Query: 151 FDESRPLPVSVPSMPLKLKVILVGERESLADFQEM 47
           F+E  PLP    S+P  LK+ LV + E++   Q++
Sbjct: 161 FEEEPPLPKHKISVPDVLKLWLVDDWENITKNQQL 195


>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 36  SSGSISWKSANDSRSPTRMTFSFNGIEGTETGRGRDSSNATQSKRS 173
           SS   S  S  D  +PTR +FS+N +       G   SN + S RS
Sbjct: 164 SSAHHSRSSYYDLATPTRSSFSYNTVGAASLPSG-GLSNLSSSLRS 208


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +2

Query: 404 GWSGRKPHSDRPPVGLHRFVAYARALGNKI-QILRLFRG 517
           G  G+KPH    P G+H  V  A  +GN   QIL  F G
Sbjct: 77  GLEGKKPHY---PSGIHGLVNAAANIGNVFGQILFGFMG 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,066,748
Number of Sequences: 5004
Number of extensions: 65410
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)