Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30910
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1356 + 36627590-36627676,36627869-36628020,36628224-366284... 31 0.67
03_02_0130 + 5791925-5792011,5792252-5792288,5792803-5792983,579... 30 1.5
12_01_0388 + 3059296-3060076,3060290-3061474,3061565-3061695,306... 29 3.5
07_01_0249 - 1844894-1845363,1845557-1848158 29 3.5
02_02_0347 + 9222556-9222927 29 3.5
12_01_1018 - 10386308-10386416,10386597-10386932,10387143-10387477 28 6.2
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 6.2
08_02_1601 - 28138206-28138597,28138928-28139054,28139150-281399... 28 8.2
08_01_0563 - 4993428-4993751,4995478-4995675 28 8.2
08_01_0549 + 4811706-4811903,4813631-4813954 28 8.2
07_03_1319 + 25790112-25790283,25790362-25790429 28 8.2
05_03_0046 - 7762450-7762531,7762657-7762845,7763272-7763408 28 8.2
>01_06_1356 +
36627590-36627676,36627869-36628020,36628224-36628471,
36628585-36628707,36628797-36629842
Length = 551
Score = 31.5 bits (68), Expect = 0.67
Identities = 14/37 (37%), Positives = 23/37 (62%)
Frame = -1
Query: 658 GKYFGSAHI*LTKTIL*FSDTSTAAAICRWSSLPAYA 548
G+Y+ +AH+ +KT+ D STA I ++ +P YA
Sbjct: 277 GRYYMAAHVFDSKTVAVPFDQSTATGIVKYKGVPNYA 313
>03_02_0130 +
5791925-5792011,5792252-5792288,5792803-5792983,
5793156-5793304,5793433-5793666,5794082-5794271,
5794398-5794523,5794603-5794702,5794900-5795289
Length = 497
Score = 30.3 bits (65), Expect = 1.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +2
Query: 338 SRQRQLALKSQNYHLHSLRDVSGWSGRKPHSD 433
S + +L N HSLR W GRKP SD
Sbjct: 395 SLDKTASLHKHNSFSHSLRRAVSWLGRKPSSD 426
>12_01_0388 +
3059296-3060076,3060290-3061474,3061565-3061695,
3061793-3061873,3062329-3062367
Length = 738
Score = 29.1 bits (62), Expect = 3.5
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +3
Query: 30 SESSGSISWKSANDSRSPTRMTFSFNGIEGT-ETGRGRDSSNATQ-SKRSRV 179
S+SS ++ AN+S SPT+ F+ + G+ T + TQ S SRV
Sbjct: 396 SDSSNNVLSSIANESTSPTQFILDFDKLVGSWRTNESAEDIQCTQTSPESRV 447
>07_01_0249 - 1844894-1845363,1845557-1848158
Length = 1023
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 282 PAAWSGASGNGGILIISLRTLWRNLCCGCG*KISLPASVLTGLRLMSR 139
P AWSG + N ++ L RNL G LP + L+GL+ ++R
Sbjct: 56 PCAWSGVACNARGAVVGLDVSGRNLTGG------LPGAALSGLQHLAR 97
>02_02_0347 + 9222556-9222927
Length = 123
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +2
Query: 383 HSLRDVSGWSGRKPHSDRPPVGLHRFVAYARALG 484
H + D G +GR+P RPP R A A A+G
Sbjct: 43 HGVADAGGRAGREPQRRRPPPPWTRSAAEAVAVG 76
>12_01_1018 - 10386308-10386416,10386597-10386932,10387143-10387477
Length = 259
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +2
Query: 113 RRHRDGERARLIKRNPVKTLAGNDIFQPHPQQRLRQSVRKEIMRIPPLPDAPDQA 277
R RDGE PV T +DI++ HP+ L +E +RI LP+A A
Sbjct: 133 RMVRDGEA----NNGPVPTAPSHDIYRAHPELVLLLR-GEEYLRIKRLPNAAADA 182
>09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = +1
Query: 49 SPGNQPMIRVRLPE*LSASMASKAQRRGEGATHQTQPSQNARG 177
SP P++++ P+ ++ M K ++ +GA+H T QN +G
Sbjct: 948 SPAQTPLVKI--PK--NSEMGVKTKKDNDGASHATTVDQNPKG 986
>08_02_1601 -
28138206-28138597,28138928-28139054,28139150-28139914,
28140714-28140929,28141433-28141903
Length = 656
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = +2
Query: 107 WHRRHRDGERARLIKRNPVKTLAGNDIFQPHPQQRLRQSVRKEIMRIPPLPDAP 268
W + D A N LAG IFQP ++L QS++++ + D P
Sbjct: 339 WPWKSTDSMEAVNGASNEFSPLAGEQIFQPEELEQLLQSLQEDSHMGSTISDPP 392
>08_01_0563 - 4993428-4993751,4995478-4995675
Length = 173
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 455 RFVAYARALGNKIQILRLFRGPSPAIKEEDARVCRQTAPAA 577
RF A + G +Q F PSPA++EE R+ + P A
Sbjct: 6 RFAA-RKVSGRALQQATAFVPPSPAVREEQRRLLPRLIPGA 45
>08_01_0549 + 4811706-4811903,4813631-4813954
Length = 173
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 455 RFVAYARALGNKIQILRLFRGPSPAIKEEDARVCRQTAPAA 577
RF A + G +Q F PSPA++EE R+ + P A
Sbjct: 6 RFAA-RKVSGRALQQATAFVPPSPAVREEQRRLLPRLIPGA 45
>07_03_1319 + 25790112-25790283,25790362-25790429
Length = 79
Score = 27.9 bits (59), Expect = 8.2
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)
Frame = -1
Query: 577 CRWSSLPAYASILLFYGWRR---PPEKSEYLNLIAQCPRVRYKAMQPNW-WAVTM 425
CRWS L + + + G RR PP +E N I + P + K+ +P W W +++
Sbjct: 13 CRWSVLRSTSPVGHQVGSRRPPVPPSAAERRNCIEEEP--KNKSNEPCWGWVISV 65
>05_03_0046 - 7762450-7762531,7762657-7762845,7763272-7763408
Length = 135
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/43 (37%), Positives = 22/43 (51%)
Frame = +2
Query: 455 RFVAYARALGNKIQILRLFRGPSPAIKEEDARVCRQTAPAANC 583
RF A + G +Q F PSPA+KEE R+ + A+C
Sbjct: 6 RFAARKVSRG-ALQQATAFVSPSPAVKEEQRRLLPEHQTIASC 47
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,859,832
Number of Sequences: 37544
Number of extensions: 525287
Number of successful extensions: 1402
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1402
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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