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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30910
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14)              31   0.68 
SB_57648| Best HMM Match : Homeobox (HMM E-Value=5.3e-30)              28   8.4  
SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  
SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       28   8.4  
SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)                28   8.4  

>SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14)
          Length = 390

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = -2

Query: 423 GFRPLHPLTSR-----SECR**FCDFNASCRCRLGRSGAT 319
           GFR   PL+ R     SEC   F D  ASC C LG +G++
Sbjct: 282 GFRAFIPLSVRGECGESECNANFADNTASCACLLGYNGSS 321


>SB_57648| Best HMM Match : Homeobox (HMM E-Value=5.3e-30)
          Length = 205

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -1

Query: 151 FDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQ 26
           F E  P+  S PS+   +  IL   R+    FQ+  PE+  Q
Sbjct: 60  FPEPTPVVTSGPSLKFSMHSILSRARDETPVFQDPSPEIISQ 101


>SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 110 HRRHRDGERARLIKRNPVKTLAGNDIFQPHPQQRL 214
           HR HR GER  L +R P   +      +  P +R+
Sbjct: 637 HREHRSGERVLLSRRRPASAMGRITTKKKTPPRRV 671


>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
 Frame = -3

Query: 482 PMPARTLQSDAAQLVGGHYEVSGHSIRLRHAVSADDN-FATLTQVVAAD 339
           PMP  + + ++  +  GH  + G ++R+    +AD   +A L +  A +
Sbjct: 701 PMPVASWKYNSGDITSGHVTIQGSALRITKTSNADSGVYACLARSPAGE 749


>SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6)
          Length = 493

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 110 HRRHRDGERARLIKRNPVKTLAGNDIFQPHPQQRL 214
           HR HR GER  L +R P   +      +  P +R+
Sbjct: 350 HREHRSGERVLLSRRRPASAMGRITTKKKTPPRRV 384


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,746,788
Number of Sequences: 59808
Number of extensions: 536777
Number of successful extensions: 1694
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1693
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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