BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30910 (700 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14) 31 0.68 SB_57648| Best HMM Match : Homeobox (HMM E-Value=5.3e-30) 28 8.4 SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4 SB_45852| Best HMM Match : I-set (HMM E-Value=0) 28 8.4 SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) 28 8.4 >SB_24608| Best HMM Match : zf-C3HC4 (HMM E-Value=2.9e-14) Length = 390 Score = 31.5 bits (68), Expect = 0.68 Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 5/40 (12%) Frame = -2 Query: 423 GFRPLHPLTSR-----SECR**FCDFNASCRCRLGRSGAT 319 GFR PL+ R SEC F D ASC C LG +G++ Sbjct: 282 GFRAFIPLSVRGECGESECNANFADNTASCACLLGYNGSS 321 >SB_57648| Best HMM Match : Homeobox (HMM E-Value=5.3e-30) Length = 205 Score = 27.9 bits (59), Expect = 8.4 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = -1 Query: 151 FDESRPLPVSVPSMPLKLKVILVGERESLADFQEMEPELSEQ 26 F E P+ S PS+ + IL R+ FQ+ PE+ Q Sbjct: 60 FPEPTPVVTSGPSLKFSMHSILSRARDETPVFQDPSPEIISQ 101 >SB_51717| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 799 Score = 27.9 bits (59), Expect = 8.4 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 110 HRRHRDGERARLIKRNPVKTLAGNDIFQPHPQQRL 214 HR HR GER L +R P + + P +R+ Sbjct: 637 HREHRSGERVLLSRRRPASAMGRITTKKKTPPRRV 671 >SB_45852| Best HMM Match : I-set (HMM E-Value=0) Length = 1122 Score = 27.9 bits (59), Expect = 8.4 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%) Frame = -3 Query: 482 PMPARTLQSDAAQLVGGHYEVSGHSIRLRHAVSADDN-FATLTQVVAAD 339 PMP + + ++ + GH + G ++R+ +AD +A L + A + Sbjct: 701 PMPVASWKYNSGDITSGHVTIQGSALRITKTSNADSGVYACLARSPAGE 749 >SB_10451| Best HMM Match : Extensin_2 (HMM E-Value=3.6) Length = 493 Score = 27.9 bits (59), Expect = 8.4 Identities = 12/35 (34%), Positives = 17/35 (48%) Frame = +2 Query: 110 HRRHRDGERARLIKRNPVKTLAGNDIFQPHPQQRL 214 HR HR GER L +R P + + P +R+ Sbjct: 350 HREHRSGERVLLSRRRPASAMGRITTKKKTPPRRV 384 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 23,746,788 Number of Sequences: 59808 Number of extensions: 536777 Number of successful extensions: 1694 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 1523 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1693 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1829596184 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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