Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30910
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical ...    28   7.4  
AL033514-11|CAA22083.2|  298|Caenorhabditis elegans Hypothetical...    27   9.8  

>Z71180-3|CAA94892.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 181 VTRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE-MEPELSEQAIYSEFE 5
           V R+R  W A+ +   +P  VP  P       V +   L   Q+ ++P L+ QA+Y+  E
Sbjct: 451 VVRQRIKWTAYPKGARIPEHVPVPP-------VAQLPPLPPMQQVIQPILTTQAVYTTEE 503


>AL021474-7|CAA16311.2|  763|Caenorhabditis elegans Hypothetical
           protein F22E12.1 protein.
          Length = 763

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 181 VTRERFDWVAFDESRPLPVSVPSMPLKLKVILVGERESLADFQE-MEPELSEQAIYSEFE 5
           V R+R  W A+ +   +P  VP  P       V +   L   Q+ ++P L+ QA+Y+  E
Sbjct: 451 VVRQRIKWTAYPKGARIPEHVPVPP-------VAQLPPLPPMQQVIQPILTTQAVYTTEE 503


>AL033514-11|CAA22083.2|  298|Caenorhabditis elegans Hypothetical
           protein Y75B8A.10 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 607 FSDTSTAAAICRWSSLPAYASILLFYGWRRPPEKSEYLNLIAQCP 473
           F DT      CRWS   +    L+  G   PP K +Y+ L+   P
Sbjct: 97  FFDTGNKEVTCRWSD-SSMKETLIHQGTLAPPPK-DYMKLLLILP 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,212,769
Number of Sequences: 27780
Number of extensions: 385103
Number of successful extensions: 1017
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)