Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30910
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    26   0.40 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     25   0.91 
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    22   4.9  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    22   6.4  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   8.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   8.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.5  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 25.8 bits (54), Expect = 0.40
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 530  IKEEDARVCRQTAPAANCSRG*SITELKDR 619
            +KE D ++C    P  +C+ G +  E K +
Sbjct: 1694 VKETDDKICFTMRPVVSCASGCTAVETKSK 1723


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 24.6 bits (51), Expect = 0.91
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 227 VHSGATSAVDAAEKYRYPRAF 165
           VHSG   AV   EK ++P+ F
Sbjct: 131 VHSGNIEAVTTKEKAKFPQEF 151


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = +3

Query: 246 YRHCLMHQTRL--QGNVAIKLAQAAKELLRF 332
           + +C + + RL  QGN+  +L Q   ELL F
Sbjct: 54  FANCELQKLRLLLQGNINNQLFQTPCELLNF 84


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -1

Query: 562 LPAYASILLFYGWRRPPEKSEYLNLIAQCPRVRY 461
           +P      ++YG   P     ++++  Q PR+RY
Sbjct: 344 IPVPVPFPVYYGNFPPRPMGPFVSIQEQIPRLRY 377


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/23 (30%), Positives = 13/23 (56%)
 Frame = -1

Query: 193 LKNIVTRERFDWVAFDESRPLPV 125
           L+N+    R +W   D+ +P P+
Sbjct: 122 LENVNNAARINWEYLDKYKPTPL 144


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 535 FYGWRRPPEKSEYLN 491
           F GW  PPE S+ ++
Sbjct: 29  FLGWNVPPEYSDLVH 43


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 413 GRKPHSDRPPV 445
           G+ PH D+PP+
Sbjct: 433 GKLPHDDQPPL 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,964
Number of Sequences: 438
Number of extensions: 4625
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)