Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30910
(700 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g37880.1 68417.m05357 expressed protein 30 1.3
At1g21000.1 68414.m02628 zinc-binding family protein similar to ... 30 1.7
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 3.9
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 29 3.9
At2g28790.1 68415.m03500 osmotin-like protein, putative similar ... 29 3.9
At5g04970.1 68418.m00526 pectinesterase, putative contains simil... 28 6.8
At5g09840.1 68418.m01138 expressed protein contains Pfam profile... 27 9.0
At1g76590.1 68414.m08912 zinc-binding family protein similar to ... 27 9.0
At1g47350.1 68414.m05242 F-box family protein-related contains T... 27 9.0
>At4g37880.1 68417.m05357 expressed protein
Length = 388
Score = 30.3 bits (65), Expect = 1.3
Identities = 27/108 (25%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Frame = -1
Query: 310 ACASLMATLPCSLVWC--IRQWRYSHYLFAYTLAQPLLWMRLKNIVTRERFDWVAFDESR 137
+C + L CSL+W + + YS +L P LW +TR+ + +
Sbjct: 222 SCLPEIQKLMCSLLWNRKLDKSPYSEFL------SPALWNNAVKELTRQYCNLLGESSES 275
Query: 136 PLPVSV----PSMPLKLKVILVGERESLADFQEMEPELSEQAIYSEFE 5
PL ++V ++P+ LK + V D+Q ME + + EF+
Sbjct: 276 PLSITVTAGTQALPVLLKYMNVVMANKKLDWQTMEQLPVDAQLSEEFQ 323
>At1g21000.1 68414.m02628 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 246
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 45 SISWKSANDSRSPTRMTFSFNGIEGTETGRGRDSSNATQSKRSRVTIFFSRIHS 206
S+ K R +TFS G G E G +S AT + R T F+R+ S
Sbjct: 137 SLGCKLGGMRRGDLSLTFSLKGKHGREYLGGSESDEATTPTKMRKTNAFNRLMS 190
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +1
Query: 112 SKAQRRGEGATHQTQPSQNARG*RYFSAASTAEVAPECTQRDNEN 246
S RRG G + + + G R FS + A C R+N N
Sbjct: 878 SSGGRRGSGTSFVSATGEPVSGIRCFSCGDPSHFANACPNRNNSN 922
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 28.7 bits (61), Expect = 3.9
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +2
Query: 128 GERARLIKRNPVKTLAGNDIFQPHPQQRLRQSVRKEIMRIPPLPDAPDQA 277
G +A+ + PV ++ FQ PQQ Q VR ++M+ P P Q+
Sbjct: 76 GHQAQHEQAKPVGHVSQQHGFQQQPQQFPSQHVRPQMMQQHPAQQMPQQS 125
>At2g28790.1 68415.m03500 osmotin-like protein, putative similar to
SP|Q41350 Osmotin-like protein precursor {Lycopersicon
esculentum}; contains Pfam profile PF00314: Thaumatin
family
Length = 249
Score = 28.7 bits (61), Expect = 3.9
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 568 SSLPAYASILLFYGWRRPPEKSE-YLNLIAQCPRVRYKAMQPN 443
+SLP AS LL + + S +L ++ CP + A+QPN
Sbjct: 4 TSLPLAASFLLLISFSSAVDTSRLFLTVVNNCPFTVWPAIQPN 46
>At5g04970.1 68418.m00526 pectinesterase, putative contains
similarity to pectinesterase from Vitis vinifera
GI:15081598, Prunus persica SP|Q43062; contains Pfam
profile PF01095 pectinesterase
Length = 624
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Frame = -3
Query: 425 EVSGHSIRLRHAVSAD----DNFATLTQVVAA 342
E SG SI +R AV+ DNF T+T+ VAA
Sbjct: 296 ETSGGSILVREAVTVGPYETDNFPTITEAVAA 327
>At5g09840.1 68418.m01138 expressed protein contains Pfam profile
PF04396: Protein of unknown function, DUF537
Length = 924
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 144 SSNATQSKRSRVTIFFSRIHS 206
SS+ TQS R +T+F + IHS
Sbjct: 17 SSSTTQSHRRTITLFITNIHS 37
>At1g76590.1 68414.m08912 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 245
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = +3
Query: 45 SISWKSANDSRSPTRMTFSFNGIEGTETGRGRDSSNATQSKRSRVTIFFSRIHS 206
S+ K R P+ +TFS G G E +S AT + R T F+R+ S
Sbjct: 139 SLGCKLGGMKRDPS-LTFSLRGKHGREYEGEWESDEATTPTKIRKTCAFNRLMS 191
>At1g47350.1 68414.m05242 F-box family protein-related contains
TIGR01640: F-box protein interaction domain
Length = 528
Score = 27.5 bits (58), Expect = 9.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 132 RGRDSSNATQSKRSRVTIFFSRIHSRGCARVYA 230
RG + RSRV +F + + C+R YA
Sbjct: 417 RGFGEYHEASGNRSRVCVFVDNVFEKDCSRFYA 449
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,592,545
Number of Sequences: 28952
Number of extensions: 372254
Number of successful extensions: 969
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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