Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30908
(574 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 153 2e-38
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 153 2e-38
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 153 2e-38
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 1e-04
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 33 0.039
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 0.84
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 27 1.5
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 27 1.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 3.4
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 26 4.5
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 26 4.5
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 26 4.5
SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr... 25 6.0
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||... 25 7.9
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 153 bits (371), Expect = 2e-38
Identities = 65/82 (79%), Positives = 76/82 (92%)
Frame = +3
Query: 258 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 437
RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 438 STVKRGTSAGRKVGLIAARRTG 503
+TV R ++ G+KVGLIAARRTG
Sbjct: 222 TTVPRQSAPGQKVGLIAARRTG 243
Score = 124 bits (300), Expect = 7e-30
Identities = 54/82 (65%), Positives = 66/82 (80%)
Frame = +1
Query: 7 SRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIG 186
+ +YTGQFVYCGK A L VGNV+PVG M EGTI+ N+EEK GDRG L R+SGN+ ++G
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVG 137
Query: 187 HNPDAKRTRVKLPSGAKKVLPS 252
H+ D +TRVKLPSGAKKV+PS
Sbjct: 138 HDVDTGKTRVKLPSGAKKVVPS 159
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 153 bits (371), Expect = 2e-38
Identities = 65/82 (79%), Positives = 76/82 (92%)
Frame = +3
Query: 258 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 437
RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 438 STVKRGTSAGRKVGLIAARRTG 503
+TV R ++ G+KVGLIAARRTG
Sbjct: 222 TTVPRQSAPGQKVGLIAARRTG 243
Score = 124 bits (300), Expect = 7e-30
Identities = 54/82 (65%), Positives = 66/82 (80%)
Frame = +1
Query: 7 SRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIG 186
+ +YTGQFVYCGK A L VGNV+PVG M EGTI+ N+EEK GDRG L R+SGN+ ++G
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVG 137
Query: 187 HNPDAKRTRVKLPSGAKKVLPS 252
H+ D +TRVKLPSGAKKV+PS
Sbjct: 138 HDVDTGKTRVKLPSGAKKVVPS 159
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 153 bits (371), Expect = 2e-38
Identities = 65/82 (79%), Positives = 76/82 (92%)
Frame = +3
Query: 258 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 437
RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G +
Sbjct: 162 RGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHS 221
Query: 438 STVKRGTSAGRKVGLIAARRTG 503
+TV R ++ G+KVGLIAARRTG
Sbjct: 222 TTVPRQSAPGQKVGLIAARRTG 243
Score = 124 bits (300), Expect = 7e-30
Identities = 54/82 (65%), Positives = 66/82 (80%)
Frame = +1
Query: 7 SRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIG 186
+ +YTGQFVYCGK A L VGNV+PVG M EGTI+ N+EEK GDRG L R+SGN+ ++G
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVG 137
Query: 187 HNPDAKRTRVKLPSGAKKVLPS 252
H+ D +TRVKLPSGAKKV+PS
Sbjct: 138 HDVDTGKTRVKLPSGAKKVVPS 159
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 360 PYVRGVAMNPVEHPHGGGNHQHIG 431
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 32.7 bits (71), Expect = 0.039
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = -1
Query: 319 PAFKIGLSIRPPPATIPTMPLFLMAEPSWLQTVALLLYA 203
P K+GL+ PP + M LF W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 0.84
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 294 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 386
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 27.5 bits (58), Expect = 1.5
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Frame = -3
Query: 317 SFQNRFVNTSTSSNNTDHASVLDGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 150
SF+ + NT+T N + LDGR +P G V L + L + + P
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 149 RRPLSPIFS 123
R+ PI S
Sbjct: 97 RQHNLPITS 105
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 27.5 bits (58), Expect = 1.5
Identities = 28/118 (23%), Positives = 52/118 (44%), Gaps = 3/118 (2%)
Frame = -3
Query: 500 GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NTTYIWPAVTFDLVLVV 327
G ASS+ + A SS +GSL Y T V ++ R G ++T + + F
Sbjct: 439 GSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDSTPVTSSSIFSTATEA 498
Query: 326 CPSSFQ-NRFVNTSTSSNNTDHASVLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEA 156
+S Q + + S+S++N +S + + G+ + L+S ++ + P A
Sbjct: 499 TDTSVQTSSAIYDSSSTSNIQSSS----SVYASSTGALSSNSLSSSTSSVSTSYIPNA 552
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 3.4
Identities = 38/153 (24%), Positives = 58/153 (37%), Gaps = 2/153 (1%)
Frame = -3
Query: 512 HDP--SGPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLYRVHGNTTYIWPAVTFDL 339
H P S SSN N T + S S + V +T + G +T ++T
Sbjct: 187 HTPIASPTTSSNSDNEYTVDVITSSSLSSFVITNVDSTTTSVINYIGASTLESSSLTN-- 244
Query: 338 VLVVCPSSFQNRFVNTSTSSNNTDHASVLDGRTFLAPDGSFTLVRLASGLCPITVAKFPE 159
+ S+F +TS+ T +S T ++ S T S T+ P
Sbjct: 245 TVSPTESTFYETKSSTSSVPTQTIDSSSFTSSTPVSLTSSSTSSS-GSSQDSTTIDSTPS 303
Query: 158 ARARRPLSPIFSSRLHTMVPSVIAPTGITFPTS 60
A L P SS + T PS+ + T+P+S
Sbjct: 304 TIATSTLQPTTSSPITTSAPSLSSALPTTYPSS 336
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 4.5
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +1
Query: 4 CSRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGT---------IVCNLEEKMGDRGRLAR 156
C R+L+ ++ CGK L V +V + GT I+ N+ K RG ++R
Sbjct: 346 CIRNLFRKTWIICGKSTRLPV-SVFQIALQVAGTDLPKLHVEAILANMISKGYMRGYISR 404
Query: 157 ASGNFATVI 183
NF TV+
Sbjct: 405 ---NFETVV 410
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -3
Query: 299 VNTSTSSNNTDHASVLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEA 156
+N S + D +S + + L DG+F LV G+C T+ +A
Sbjct: 96 INLIDSPGHVDFSSEVSSASRLC-DGAFVLVDAVEGVCSQTITVLRQA 142
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -3
Query: 296 NTSTSSNNTDHASVLDGRTFLAPDGSFT-LVRLASGLCPITVAK 168
N ++++NN ++ +V + +TF P S T V S + P + K
Sbjct: 322 NNNSNNNNGNNGTVPNAKTFFTPPSSITQQVPFPSTIIPESTVK 365
>SPBC543.10 |||GET complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 171
Score = 25.4 bits (53), Expect = 6.0
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = -1
Query: 346 LTLYLWYALPAFKIGLSIRPPPATIPTMPLFLMAEPSW 233
L+L+LW F+ + + + +P FL+ PSW
Sbjct: 104 LSLFLWILTRGFRFYIQFKESKTPVFFLPAFLL--PSW 139
>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1157
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -2
Query: 204 LSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNGTLSHSSNRH 76
L++R + N S E + GT ++HF+F + H + R+
Sbjct: 868 LTLRRMCNES-EYTIGTSNAKDVSHFVFSCPYYTHFCHPTRRY 909
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,552,207
Number of Sequences: 5004
Number of extensions: 54935
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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