Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30908
(574 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 153 7e-38
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.16
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 30 1.1
06_02_0282 + 13720419-13720985 30 1.5
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.0
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 2.0
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 3.5
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 3.5
11_06_0377 - 22900042-22900452,22900527-22902236 28 4.6
06_03_0808 - 24799383-24801275 28 6.1
06_02_0045 + 10927561-10927614,10927693-10928052 27 8.0
01_07_0269 - 42414345-42415328,42415419-42415551,42415939-424160... 27 8.0
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 153 bits (372), Expect = 7e-38
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 258 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 437
R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 438 STVKRGTSAGRKVGLIAARRTGRI 509
STV+R G+KVGLIAARRTGR+
Sbjct: 223 STVRRDAPPGQKVGLIAARRTGRL 246
Score = 120 bits (290), Expect = 6e-28
Identities = 50/86 (58%), Positives = 68/86 (79%)
Frame = +1
Query: 7 SRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIG 186
+ +YTGQFVYCG++ATL +GNV+P+ ++ EG +VCN+E +GDRG ARASG++A VI
Sbjct: 79 AEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVIS 138
Query: 187 HNPDAKRTRVKLPSGAKKVLPSRTEA 264
HNPD +R+KLPSGAKK++PS A
Sbjct: 139 HNPDNGTSRIKLPSGAKKIVPSSCRA 164
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 281 WRWTY*QTYFESWKGIPQVQG 343
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +1
Query: 121 EEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRTEAWSVLLLEVDVLT 300
EEK+ + L G +IG N K T +KL G +K T+ VLL E +VL
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499
Query: 301 NLF 309
N F
Sbjct: 500 NYF 502
>06_02_0282 + 13720419-13720985
Length = 188
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 396 HPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTG 503
+PHGGG H + +R G + +AARR G
Sbjct: 47 NPHGGGGHAPLPPPQNPRRPNLVGAEEVAVAARRRG 82
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 159 LWKLRHCDWT 188
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 29.5 bits (63), Expect = 2.0
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = -1
Query: 190 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWYPQS 92
C W++ H+P L H + +C WY S
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWYTTS 105
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 281 WRWTY*QTYFESWKGIPQVQG 343
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 372 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 479
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 28.3 bits (60), Expect = 4.6
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 52 ATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 219
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>06_03_0808 - 24799383-24801275
Length = 630
Score = 27.9 bits (59), Expect = 6.1
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = -2
Query: 183 NHSGEVS-RGTCQTTSITHFLFKIAHNGTLS 94
NHSG V RG C T+ + + A NG LS
Sbjct: 371 NHSGLVRLRGLCANGDDTYLVLEFAENGALS 401
>06_02_0045 + 10927561-10927614,10927693-10928052
Length = 137
Score = 27.5 bits (58), Expect = 8.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 405 GGGNHQHIGKASTVKRGTSAGRKVGLIAARRTG 503
GGG H + + V+ T AGR V +A R G
Sbjct: 45 GGGGHVQLVRTLVVRAKTRAGRSVYEVAVRMGG 77
>01_07_0269 -
42414345-42415328,42415419-42415551,42415939-42416007,
42416459-42416672,42416785-42417040
Length = 551
Score = 27.5 bits (58), Expect = 8.0
Identities = 24/92 (26%), Positives = 34/92 (36%), Gaps = 5/92 (5%)
Frame = +1
Query: 28 QFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKR 207
Q + C +A GN+ PV T I N + + + + G + HN ++
Sbjct: 401 QGIECKNQAASHPGNLTPVEGTTVSKIDSNTDSLVPSSISILASDGFSCPQVEHNQQSRL 460
Query: 208 TRVKLPSGAK-----KVLPSRTEAWSVLLLEV 288
T P K KV P TE L EV
Sbjct: 461 TPNSTPEALKRKSCMKVYPLDTEKNLGLFSEV 492
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,855,463
Number of Sequences: 37544
Number of extensions: 407389
Number of successful extensions: 1404
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1367
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1403
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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