Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30908
(574 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 3e-41
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 132 1e-31
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 36 0.031
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13) 28 4.7
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05) 27 8.2
SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088) 27 8.2
SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05) 27 8.2
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0) 27 8.2
SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05) 27 8.2
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 165 bits (400), Expect = 3e-41
Identities = 74/89 (83%), Positives = 79/89 (88%)
Frame = +3
Query: 255 NRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGK 434
NR +VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 162 NRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIGH 221
Query: 435 ASTVKRGTSAGRKVGLIAARRTGRIVEGK 521
STV+R T AGRKVGLIAARRTG + G+
Sbjct: 222 PSTVRRDTPAGRKVGLIAARRTGLLRGGQ 250
Score = 132 bits (320), Expect = 1e-31
Identities = 58/86 (67%), Positives = 70/86 (81%)
Frame = +1
Query: 7 SRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIG 186
+ +YTGQF+YCGKKA L++GN +PVG M EGTI+ ++EEK GDRGRLAR SGN+ATVI
Sbjct: 79 TEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVIS 138
Query: 187 HNPDAKRTRVKLPSGAKKVLPSRTEA 264
HN + KRTRVKLPSG KKV+PS A
Sbjct: 139 HNVEKKRTRVKLPSGIKKVIPSSNRA 164
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 132 bits (320), Expect = 1e-31
Identities = 58/86 (67%), Positives = 70/86 (81%)
Frame = +1
Query: 7 SRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIG 186
+ +YTGQF+YCGKKA L++GN +PVG M EGTI+ ++EEK GDRGRLAR SGN+ATVI
Sbjct: 37 TEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVIS 96
Query: 187 HNPDAKRTRVKLPSGAKKVLPSRTEA 264
HN + KRTRVKLPSG KKV+PS A
Sbjct: 97 HNVEKKRTRVKLPSGIKKVIPSSNRA 122
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 35.5 bits (78), Expect = 0.031
Identities = 23/68 (33%), Positives = 37/68 (54%)
Frame = +1
Query: 52 ATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 231
A L+ G+ P+ + GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 232 AKKVLPSR 255
+K + S+
Sbjct: 168 VEKEVSSK 175
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 29.1 bits (62), Expect = 2.7
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -2
Query: 207 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLSHSSNRHHISNFKSCFLSTIN 34
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 33 KLACV 19
CV
Sbjct: 136 NQRCV 140
>SB_18518| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 478
Score = 28.7 bits (61), Expect = 3.6
Identities = 17/42 (40%), Positives = 21/42 (50%)
Frame = -1
Query: 529 VSVLPSTILPVLRAAIRPTLRPADVPLLTVEALPIC*WLPPP 404
V VL + P+LR +RP LRP P+L L W PP
Sbjct: 410 VGVLHPMLRPMLRPMLRPMLRPMLRPMLR-PMLQYKLWCQPP 450
>SB_44978| Best HMM Match : REJ (HMM E-Value=3.9e-13)
Length = 1819
Score = 28.3 bits (60), Expect = 4.7
Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = -3
Query: 347 FDLVLVVCPSSFQNRFVNT--STSSNNTDHASVLDGRTFLAPDGSFT 213
F L V PSS QN F + + ++ T +LD TFL PDGS T
Sbjct: 114 FSLNCDVIPSS-QNAFQSFEFNPAATTTYLNLILDSETFLEPDGSAT 159
>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -1
Query: 484 IRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTYGQQLRLTLYLWYA 323
IRP + V L V + + WLP + + P Y +R TL+L Y+
Sbjct: 222 IRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQYKHAVRSTLFLRYS 275
>SB_50959| Best HMM Match : Exo_endo_phos (HMM E-Value=8.7e-05)
Length = 275
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 350 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVL 252
T DL+L P N VNTST+S +DH +V+
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVI 220
>SB_40024| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0088)
Length = 321
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 350 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVL 252
T DL+L P N VNTST+S +DH +V+
Sbjct: 144 TLDLLLTTYP----NVIVNTSTASGLSDHLAVI 172
>SB_31666| Best HMM Match : Exo_endo_phos (HMM E-Value=7.6e-05)
Length = 249
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 350 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVL 252
T DL+L P N VNTST+S +DH +V+
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVI 220
>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1360
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 350 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVL 252
T DL+L P N VNTST+S +DH +V+
Sbjct: 369 TLDLLLTTYP----NVIVNTSTASGLSDHLAVI 397
>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 212
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -2
Query: 564 NRLNNKFRSPSLYRSCPPRSFR 499
N L K ++PSL RS PPR+ R
Sbjct: 147 NLLPRKLQNPSLQRSQPPRNLR 168
>SB_24162| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 801
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 350 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVL 252
T DL+L P N VNTST+S +DH +V+
Sbjct: 86 TLDLLLTTYP----NVIVNTSTASGLSDHLAVI 114
>SB_5691| Best HMM Match : Exo_endo_phos (HMM E-Value=7.5e-05)
Length = 273
Score = 27.5 bits (58), Expect = 8.2
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = -3
Query: 350 TFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVL 252
T DL+L P N VNTST+S +DH +V+
Sbjct: 192 TLDLLLTTYP----NVIVNTSTASGLSDHLAVI 220
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,953,216
Number of Sequences: 59808
Number of extensions: 447845
Number of successful extensions: 1386
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1376
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1361520496
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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