Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30908
(574 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 154 5e-38
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 153 1e-37
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 149 1e-36
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 2e-05
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 46 2e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 46 2e-05
At2g41230.1 68415.m05091 expressed protein 31 0.72
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 29 2.2
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 2.9
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 3.8
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ... 28 3.8
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 28 3.8
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 28 5.1
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 28 5.1
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 28 5.1
At5g58575.1 68418.m07339 expressed protein 27 6.7
At4g32620.1 68417.m04644 expressed protein predicted protein T10... 27 6.7
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 27 6.7
At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) l... 27 8.9
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 154 bits (373), Expect = 5e-38
Identities = 67/84 (79%), Positives = 74/84 (88%)
Frame = +3
Query: 258 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 437
R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 438 STVKRGTSAGRKVGLIAARRTGRI 509
STV+R G+KVGLIAARRTGR+
Sbjct: 223 STVRRDAPPGKKVGLIAARRTGRL 246
Score = 119 bits (286), Expect = 2e-27
Identities = 50/86 (58%), Positives = 68/86 (79%)
Frame = +1
Query: 7 SRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIG 186
+ +YTGQF+YCGKKATL VGNV+P+ ++ EG ++CN+E +GDRG ARASG++A VI
Sbjct: 79 AEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIA 138
Query: 187 HNPDAKRTRVKLPSGAKKVLPSRTEA 264
HNPD +R+KLPSG+KK++PS A
Sbjct: 139 HNPDNDTSRIKLPSGSKKIVPSGCRA 164
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 153 bits (370), Expect = 1e-37
Identities = 68/83 (81%), Positives = 71/83 (85%)
Frame = +3
Query: 258 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 437
R M+G VAGGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 164 RAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHA 223
Query: 438 STVKRGTSAGRKVGLIAARRTGR 506
STV+R SAG KVG IAARRTGR
Sbjct: 224 STVRRDKSAGAKVGQIAARRTGR 246
Score = 124 bits (298), Expect = 6e-29
Identities = 52/86 (60%), Positives = 70/86 (81%)
Frame = +1
Query: 7 SRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIG 186
+ +YTGQ++YCGKKA L VGNV+P+G++ EG ++CN+E +GDRG LARASG++A VI
Sbjct: 80 AEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIA 139
Query: 187 HNPDAKRTRVKLPSGAKKVLPSRTEA 264
HNP++ TRVKLPSG+KK+LPS A
Sbjct: 140 HNPESNTTRVKLPSGSKKILPSACRA 165
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 149 bits (362), Expect = 1e-36
Identities = 66/84 (78%), Positives = 73/84 (86%)
Frame = +3
Query: 258 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 437
R M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 438 STVKRGTSAGRKVGLIAARRTGRI 509
STV+R G+KVGLIAARRTGR+
Sbjct: 223 STVRRDAPPGQKVGLIAARRTGRL 246
Score = 124 bits (298), Expect = 6e-29
Identities = 53/86 (61%), Positives = 70/86 (81%)
Frame = +1
Query: 7 SRSLYTGQFVYCGKKATLEVGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIG 186
+ +YTGQF+YCGKKATL VGNV+P+ ++ EG +VCN+E +GDRG LARASG++A VI
Sbjct: 79 AEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIA 138
Query: 187 HNPDAKRTRVKLPSGAKKVLPSRTEA 264
HNPD+ TR+KLPSG+KK++PS A
Sbjct: 139 HNPDSDTTRIKLPSGSKKIVPSGCRA 164
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +3
Query: 333 KYKVKRNCWPYVRGVAM-NPVEHPHGG 410
K +KRN W VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = +1
Query: 64 VGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 243
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 244 LPSRTEA 264
+ ++ A
Sbjct: 118 INAKCRA 124
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +3
Query: 252 KNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 413
K R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 121 KCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 45.6 bits (103), Expect = 2e-05
Identities = 23/67 (34%), Positives = 38/67 (56%)
Frame = +1
Query: 64 VGNVMPVGAMTEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 243
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 244 LPSRTEA 264
+ ++ A
Sbjct: 118 INAKCRA 124
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/54 (44%), Positives = 32/54 (59%)
Frame = +3
Query: 252 KNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 413
K R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 121 KCRATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At2g41230.1 68415.m05091 expressed protein
Length = 88
Score = 30.7 bits (66), Expect = 0.72
Identities = 22/55 (40%), Positives = 28/55 (50%)
Frame = -1
Query: 412 PPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLFLM 248
P P G + + T R+ L L+L L LP F L PPPAT+ +PL LM
Sbjct: 14 PKPMGLNGSSLITARSVALLLFLSLLL-LILPPFLPPLP--PPPATLLLLPLLLM 65
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 29.1 bits (62), Expect = 2.2
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 337 YLWYALPAFKIGL--SIRPPPATIPTMPLFLMAEPSWLQTVALL 212
Y+WYALP + IGL ++ T P L PS L V +
Sbjct: 301 YIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFM 344
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 309 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 470
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 3.8
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 281 WRWTY*QTYFESWKGIPQVQG 343
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 676
Score = 28.3 bits (60), Expect = 3.8
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = -2
Query: 144 TSITHFLFKIAHNGTLSHSSNRHHISNFKSCFLSTINKLACVEASGA 4
+++T+ I NG SSN++ + F+ ST+N LA VEA+ +
Sbjct: 137 STVTYDGSAILLNGANISSSNQNQVDEFRDLVSSTLN-LAAVEAANS 182
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 28.3 bits (60), Expect = 3.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Frame = +3
Query: 213 SKATVWSQEGSAIKNRGMVGIVAGGGRIDKPILKAGRAYH 332
SK +W +A++ RG++ + I +L+ GR H
Sbjct: 650 SKTFMWKTLSAAVRMRGLISVNVASSGIASLLLQGGRTAH 689
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 166 NFATVIGHNPDAKRTRVKLPSGAKKVLPSRTEAWSVLLLEVDVLTNLF*KLEGHTTSTRS 345
N ++IG ++ +++ P K P E W +L E D L+ L + GH S +S
Sbjct: 197 NKMSLIGETENSSDIKIRGPKSQSKHKP---EEWMLLDKESDALSQLNLAIVGHVDSGKS 253
Query: 346 NVT 354
++
Sbjct: 254 TLS 256
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.9 bits (59), Expect = 5.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -1
Query: 199 HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQWYPQS*LQQASHF 68
H+ Q WRS + HV D+L P ++C W S +++ HF
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSWLKFSAIEE--HF 707
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 27.9 bits (59), Expect = 5.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 145 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSRTE 261
R +A NF ++G +P T V P+ A+ + P E
Sbjct: 78 RGVKAKTNFGVIVGSSPTQSSTVVDSPTAARFITPPHLE 116
>At5g58575.1 68418.m07339 expressed protein
Length = 181
Score = 27.5 bits (58), Expect = 6.7
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +1
Query: 61 EVGNVMPVGA-MTEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRT 210
EV N M G + G +LE+ MG +GR ARA +T N +A+R+
Sbjct: 91 EVFNCMNCGRQIVAGRFAPHLEKCMG-KGRKARAKTTRSTTAAQNRNARRS 140
>At4g32620.1 68417.m04644 expressed protein predicted protein
T10M13.8, Arabidopsis thaliana
Length = 1544
Score = 27.5 bits (58), Expect = 6.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 331 WYALPAFKIGLSIRPPPATIPTMPLFLMAEPSWLQTVALLL 209
W F++ LS++ + M FLMA+ WL ALLL
Sbjct: 595 WNESEQFELSLSLQG----VSLMSYFLMADVDWLSRAALLL 631
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 27.5 bits (58), Expect = 6.7
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -1
Query: 415 LPPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMP 260
+PPP G M P+ YGQ LP +G+ PP A +P P
Sbjct: 611 VPPPPGSQFSHMQVPQPYGQ-----------LPPLSMGMMQPPPMAEMPPPP 651
>At2g44150.1 68415.m05492 SET domain-containing protein (ASHH3) low
similarity to huntingtin interacting protein 1 [Homo
sapiens] GI:12697196; contains Pfam profile PF00856: SET
domain; identical to cDNA ASH1-like protein 3 (ASHH3)
partial cds GI:15488419
Length = 363
Score = 27.1 bits (57), Expect = 8.9
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = -3
Query: 380 GNTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVLDGRT 240
G T + +T D+V+ ++R++N S + N ++DG T
Sbjct: 166 GETNFYLCEITRDMVIDATHKGNKSRYINHSCNPNTQMQKWIIDGET 212
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,808,750
Number of Sequences: 28952
Number of extensions: 304653
Number of successful extensions: 929
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 928
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1112061928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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