Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30907
         (663 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    28   0.059
AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory recept...    24   1.3  
AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory recept...    24   1.3  
AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory recept...    24   1.3  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   3.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 28.3 bits (60), Expect = 0.059
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 546  SWIVQFEGPQEITAYLNFSPTVKISWMRSSTQIML 442
            SW+  F+G   IT Y+      K+SW  ++ ++++
Sbjct: 915  SWVAPFDGNSPITRYMIEYKQSKVSWEGNTERVLV 949


>AM292368-1|CAL23180.2|  387|Tribolium castaneum gustatory receptor
           candidate 47 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = -1

Query: 414 LLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*GSAIRSIFTVALFRRTNTHC 250
           ++ +I + C L   N R   N+ T     +   +  +A  S  T  LF+  + +C
Sbjct: 165 IITMINMNCALWYINCRAVGNASTALAESFQNVLVPTASNSKSTKVLFKDVDRNC 219


>AM292347-1|CAL23159.2|  387|Tribolium castaneum gustatory receptor
           candidate 26 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = -1

Query: 414 LLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*GSAIRSIFTVALFRRTNTHC 250
           ++ +I + C L   N R   N+ T     +   +  +A  S  T  LF+  + +C
Sbjct: 165 IITMINMNCALWYINCRAVGNASTALAESFQNVLVPTASNSKSTKVLFKDVDRNC 219


>AM292327-1|CAL23139.2|  387|Tribolium castaneum gustatory receptor
           candidate 6 protein.
          Length = 387

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 13/55 (23%), Positives = 24/55 (43%)
 Frame = -1

Query: 414 LLEVIGIRCPLSLANPRLYTNSRTLFKLGYPQAM*GSAIRSIFTVALFRRTNTHC 250
           ++ +I + C L   N R   N+ T     +   +  +A  S  T  LF+  + +C
Sbjct: 165 IITMINMNCALWYINCRAVGNASTALAESFQNVLVPTASNSKSTKVLFKDVDRNC 219


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 384 LSLANPRLYTNSRTLF 337
           LS A PRL  N+RT+F
Sbjct: 87  LSSAFPRLKRNARTIF 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,580
Number of Sequences: 336
Number of extensions: 3869
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17177325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)