Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30907
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   112   4e-26
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   112   4e-26
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   111   9e-26
SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces...    29   0.60 
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    27   1.8  
SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr 1||...    27   2.4  
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.2  
SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.6  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    25   7.4  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   9.7  
SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|...    25   9.7  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  112 bits (270), Expect = 4e-26
 Identities = 49/84 (58%), Positives = 67/84 (79%)
 Frame = +2

Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
           VFV+ NKAT  ML++ EPY+ +G PNLK+VREL+YKRGF K++ QRI ++ N+I+E  L 
Sbjct: 123 VFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDNAIIEAALG 182

Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
           K++I+ +EDLIHEI+TVG  FK A
Sbjct: 183 KYSILSIEDLIHEIYTVGPNFKQA 206



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 36/81 (44%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = +3

Query: 15  RSSAIKKKREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWY 191
           + +A +KKRE+  KRAE Y  EYR  ER++I L R+AR  GNYYVP  +++         
Sbjct: 41  KKAAQQKKRELIAKRAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGI 100

Query: 192 QPSFTEVRKVLQLFRLRQINN 254
                + RK++QL RL QINN
Sbjct: 101 NNIPPKARKIMQLLRLIQINN 121



 Score = 52.4 bits (120), Expect = 6e-08
 Identities = 19/36 (52%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = +1

Query: 511 NFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKI 615
           NF+WPF+L++P GGWR +K  H+++GGD G R++ I
Sbjct: 208 NFIWPFQLSSPLGGWRDRKFKHFIEGGDAGKRDEHI 243


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  112 bits (270), Expect = 4e-26
 Identities = 48/82 (58%), Positives = 65/82 (79%)
 Frame = +2

Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
           VFVR NKA   MLRI EPY+ +G PNL SVREL+YKRGF K++GQRI ++ N+++E+ L 
Sbjct: 121 VFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALSDNALIEEALG 180

Query: 437 KHNIICVEDLIHEIFTVGEKFK 502
           K+++I +ED+IHEI+ VG  FK
Sbjct: 181 KYDVISIEDIIHEIYNVGSHFK 202



 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 30/83 (36%), Positives = 52/83 (62%)
 Frame = +3

Query: 6   LKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNP 185
           + ++ +  K ++E FKRAE ++  YR +ER+ IRL R A+N+G+ +VP  +++       
Sbjct: 37  IAKKEAQKKNRKETFKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIA 96

Query: 186 WYQPSFTEVRKVLQLFRLRQINN 254
             +    ++RKVL+L RL +INN
Sbjct: 97  GVKNMPPKIRKVLRLLRLSRINN 119


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  111 bits (267), Expect = 9e-26
 Identities = 48/84 (57%), Positives = 66/84 (78%)
 Frame = +2

Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
           +FV+ NKA   ML++ EPY+ +G PN K+VREL+YKRGF K++ QRIP++ N+I+E  L 
Sbjct: 122 IFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDNAIIEAALG 181

Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
           K++I+ VEDLIHEI+TVG  FK A
Sbjct: 182 KYSILSVEDLIHEIYTVGPNFKQA 205



 Score = 65.3 bits (152), Expect = 7e-12
 Identities = 37/81 (45%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
 Frame = +3

Query: 15  RSSAIKKKREIF-KRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWY 191
           + SA +KKRE+  KRAE Y  EYR  ER++I LAR+AR  GNY+VP   ++         
Sbjct: 40  KKSARQKKRELIAKRAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGI 99

Query: 192 QPSFTEVRKVLQLFRLRQINN 254
                + RK++QL RL QINN
Sbjct: 100 NNIPPKARKIMQLLRLLQINN 120



 Score = 54.8 bits (126), Expect = 1e-08
 Identities = 21/36 (58%), Positives = 29/36 (80%), Gaps = 1/36 (2%)
 Frame = +1

Query: 511 NFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNREDKI 615
           NFLWPFKL++P GGWR +K  H+++GGD G R++ I
Sbjct: 207 NFLWPFKLSSPLGGWRERKFKHFIEGGDAGKRDEHI 242


>SPBC18H10.07 |||WW domain-binding protein 4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 224

 Score = 29.1 bits (62), Expect = 0.60
 Identities = 11/39 (28%), Positives = 25/39 (64%)
 Frame = +3

Query: 21  SAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGN 137
           +++K+ REI ++ E+    +R+K ++  ++ + A N GN
Sbjct: 151 TSLKRNREIIEKEERSSFHFRVKPKNLDKVPKLAENEGN 189


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -2

Query: 608 SSRLPKSPPST**MVFLR-QPPVGLFNLKGHRKLPRT*TFLQ 486
           +S L  +PPST  + F+R  PP+ + N    R  P    FLQ
Sbjct: 353 NSTLSSTPPSTLQLTFVRFPPPMQVENYASSRNYPANPFFLQ 394


>SPAC1952.01 ||SPAC1B3.19|Pig-U|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 408

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/61 (29%), Positives = 29/61 (47%)
 Frame = -3

Query: 505 VLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGESTFVY*LTDTL*VGV 326
           +L +F+  +D M   L T+N +    +L +A    W TL    G + F Y     L +G+
Sbjct: 319 LLPIFNKVQDRMRYSLLTNNAIVFALVLGSAFYHSWITLG--CGNANFYYASNLILALGL 376

Query: 325 S 323
           S
Sbjct: 377 S 377


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
 Frame = +1

Query: 496 VQVRGNFLWPFKLNNPTGGWR-KKTIHYVDGGDFGNRED 609
           + +RG +  P    NP G W   + +H+   G+  +  D
Sbjct: 55  ISLRGPYRLPLDFENPGGNWMWGEDVHFDQNGELQSEAD 93


>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 5/64 (7%)
 Frame = -3

Query: 625 KIVESCLRGYQSLPRRH-----NEWSSCANHQLDCSI*RATGNYRVLELFSNSEDLMDEV 461
           KI+E  +R   +L  R      N W+  +      SI   T N+R      N E + DE 
Sbjct: 165 KILERRMRKRSNLSNRQLNTSENNWTCLSIENFGISIHVITKNFREYYKLDNIEHVKDET 224

Query: 460 LNTD 449
           L +D
Sbjct: 225 LYSD 228


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 572 IMSTGETLVTAKTRFNDLLRRMV 640
           IMST    +T+ TRF+D L  M+
Sbjct: 134 IMSTSPLCITSDTRFDDALLLMI 156


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 567 GLLAPTTSWIVQFEGPQEITAYLN 496
           GL  P   WIVQ++ P +   Y++
Sbjct: 399 GLDIPAVDWIVQYDPPDDPRDYIH 422


>SPAC1782.08c |rex3||exonuclease Rex3 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 540

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 287 NMLRIAEPYI--AWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSI 418
           N  +I+ PY     GYP +K  + L YK    KLS   +PI +  I
Sbjct: 35  NSTKISPPYSENVEGYPKVKIEKSLPYKYDNCKLS-ICVPIVTTCI 79


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,663
Number of Sequences: 5004
Number of extensions: 62130
Number of successful extensions: 176
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)