Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30907
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814... 129 2e-30
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351... 124 8e-29
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213... 93 1e-19
10_06_0101 + 10736987-10737100,10737263-10737301,10737397-107374... 30 1.9
10_08_0941 - 21717703-21718091,21718454-21718564,21718707-217187... 28 5.8
01_06_0457 - 29524544-29525962,29526518-29526606,29526841-295268... 28 7.6
>08_01_0835 +
8147177-8147359,8147871-8147968,8148045-8148102,
8148192-8148271,8148770-8148872,8148966-8149181
Length = 245
Score = 129 bits (312), Expect = 2e-30
Identities = 55/84 (65%), Positives = 72/84 (85%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+ +N ++E+ L
Sbjct: 118 VFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLQNNKVIEEGLG 177
Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
KH+IIC+EDL+HEI TVG FK A
Sbjct: 178 KHDIICIEDLVHEIMTVGPHFKEA 201
Score = 59.7 bits (138), Expect = 2e-09
Identities = 25/35 (71%), Positives = 27/35 (77%)
Frame = +1
Query: 511 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKI 615
NFLWPFKL P GG +KK HYV+GGD GNRED I
Sbjct: 203 NFLWPFKLKAPLGGLKKKRNHYVEGGDAGNREDYI 237
Score = 58.4 bits (135), Expect = 5e-09
Identities = 29/83 (34%), Positives = 49/83 (59%)
Frame = +3
Query: 6 LKRRSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNP 185
L + A++ ++ IF RA+QY +EY +E++ ++L R+AR +G +YV +++
Sbjct: 34 LAEKKKAVESRKLIFARAKQYAQEYDAQEKELVQLKREARMKGGFYVSPEAKLLFVVRIR 93
Query: 186 WYQPSFTEVRKVLQLFRLRQINN 254
+ RK+LQL RLRQI N
Sbjct: 94 GINAMHPKTRKILQLLRLRQIFN 116
>04_04_1075 +
30634141-30634320,30634917-30635014,30635113-30635170,
30635259-30635338,30635686-30635788,30635847-30636080
Length = 250
Score = 124 bits (298), Expect = 8e-29
Identities = 56/90 (62%), Positives = 73/90 (81%), Gaps = 6/90 (6%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKR-- 430
VF+++NKAT+NMLR EPY+A+GYPNLKSVREL+YKRG+ KL+ QRIP+T+N ++E+
Sbjct: 117 VFLKVNKATINMLRRVEPYVAYGYPNLKSVRELIYKRGYGKLNKQRIPLTNNKVIEESWC 176
Query: 431 ----LHKHNIICVEDLIHEIFTVGEKFKYA 508
L KH+IIC+EDL+HEI TVG FK A
Sbjct: 177 LYQGLGKHDIICIEDLVHEIMTVGPHFKEA 206
Score = 57.6 bits (133), Expect = 8e-09
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +1
Query: 511 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKI 615
NFLWPFKL P GG +KK HYV+GGD GNRE+ I
Sbjct: 208 NFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYI 242
Score = 57.2 bits (132), Expect = 1e-08
Identities = 28/80 (35%), Positives = 47/80 (58%)
Frame = +3
Query: 15 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWYQ 194
+ +I+ ++ IF RA+QY +EY +E++ ++L R+AR +G +YV ++
Sbjct: 36 KKKSIESRKLIFSRAKQYAEEYEAQEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGIN 95
Query: 195 PSFTEVRKVLQLFRLRQINN 254
+ RK+LQL RLRQI N
Sbjct: 96 AMHPKTRKILQLLRLRQIFN 115
>08_02_1442 +
27120604-27120890,27121029-27121166,27121280-27121382,
27121877-27122036,27122927-27123114,27123203-27124770,
27124882-27125869,27126595-27127098,27127347-27127433,
27127753-27127821,27128012-27128041
Length = 1373
Score = 93.5 bits (222), Expect = 1e-19
Identities = 39/84 (46%), Positives = 61/84 (72%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VF++ AT+ L + EP+I +G+PNLK+V++L+YK+G L + P+TSN ++EK L
Sbjct: 120 VFLKATDATMKRLLVVEPFITYGFPNLKNVKDLIYKKGRGFLDKEPFPLTSNDLIEKALG 179
Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
++ IIC+EDL+HEI +VG F+ A
Sbjct: 180 EYGIICLEDLVHEIASVGPHFREA 203
>10_06_0101 +
10736987-10737100,10737263-10737301,10737397-10737474,
10737539-10737685,10737781-10737888,10738115-10738449,
10738572-10739544,10739702-10739980
Length = 690
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Frame = +3
Query: 3 TLKRRSSAIKKKREIF--KRAEQYVKE-YRIKERDEIRLARQARNRGNYY 143
TL+ R+ IK KRE+F KR E ++E ++ + E+ + A NR +
Sbjct: 149 TLETRTDPIKLKREVFRRKRKEHRIQELLQVDKEAELHMRNVATNRSRNF 198
>10_08_0941 -
21717703-21718091,21718454-21718564,21718707-21718791,
21718885-21719106,21719804-21720292,21722206-21722322
Length = 470
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/42 (38%), Positives = 22/42 (52%)
Frame = -1
Query: 528 EGPQEITAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEV 403
EGP I AY +SP + S Q+ L +WSL +T + V
Sbjct: 88 EGPAGI-AYARWSPDSRHILTTSEFQLRLTVWSLVNTACIHV 128
>01_06_0457 -
29524544-29525962,29526518-29526606,29526841-29526892,
29527573-29527677,29528181-29528208,29528279-29528343,
29528808-29528880,29528932-29529113
Length = 670
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 310 LHCLGIPQLKECP*VSIQTWIRQAEW 387
LHC G+PQ+K +W+R +E+
Sbjct: 109 LHCSGLPQIKLLSRFRRSSWVRTSEY 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,566,456
Number of Sequences: 37544
Number of extensions: 396892
Number of successful extensions: 935
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 900
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 930
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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