Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30907
(663 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32) 139 2e-33
SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.4
SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23) 29 4.5
SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34) 28 5.9
SB_17889| Best HMM Match : Patched (HMM E-Value=0.14) 28 5.9
SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.9
SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37) 28 7.8
>SB_58517| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.5e-32)
Length = 245
Score = 139 bits (336), Expect = 2e-33
Identities = 65/84 (77%), Positives = 72/84 (85%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VFVRLNKAT NMLRI +PYIA+GYPNLKSVREL+YKRG+ K+ QR+ +T NSIVEK L
Sbjct: 118 VFVRLNKATANMLRIVQPYIAFGYPNLKSVRELIYKRGYGKVDKQRVALTDNSIVEKVLG 177
Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
KH IICVEDLIHEIFTVGE FK A
Sbjct: 178 KHGIICVEDLIHEIFTVGEHFKEA 201
Score = 79.0 bits (186), Expect = 3e-15
Identities = 38/74 (51%), Positives = 51/74 (68%)
Frame = +3
Query: 33 KKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWYQPSFTEV 212
K++EIFKRAE+YVKEYR KE DE+R+ + A+ GN+YVP +++ +V
Sbjct: 43 KRKEIFKRAEKYVKEYRQKEVDELRMKKMAKKHGNFYVPPEARLAFVIRIRGINGVSPKV 102
Query: 213 RKVLQLFRLRQINN 254
RK+LQL RLRQINN
Sbjct: 103 RKILQLLRLRQINN 116
Score = 68.5 bits (160), Expect = 5e-12
Identities = 27/35 (77%), Positives = 32/35 (91%)
Frame = +1
Query: 511 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKI 615
NFLWPFKL++P GG+RKKT H+V+GGD GNREDKI
Sbjct: 203 NFLWPFKLSSPKGGFRKKTTHFVEGGDHGNREDKI 237
>SB_5058| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 440
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 502 LELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSDWYTLSTQLGE 371
+E+F +DE + V E +LN DWY+LS + GE
Sbjct: 56 VEIFDERSFSVDERVAWGLVQIREDVLNGETIDDWYSLSGKQGE 99
>SB_55359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2516
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%)
Frame = -3
Query: 511 YRVLELFSNSEDLMDEVLNTDNVVFMEPLLNNAVGSD-WYTLSTQLGESTFVY 356
Y V + DL+ +L D F+E +L++ D W L+ ++ E TFV+
Sbjct: 286 YNVCQAAMPGSDLLS-ILEKDEQQFIEQVLSDRKSGDIWLGLNDRVSEGTFVW 337
>SB_37212| Best HMM Match : zf-C2H2 (HMM E-Value=2e-23)
Length = 827
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 87 KERDEIRLARQARNRGNYYVPX*SQIGICHT 179
K++DE AR+ R + + +P S + ICHT
Sbjct: 597 KKKDESESARRRRAQSSSVLPKFSSVDICHT 627
>SB_3843| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 15 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 140
R AI ++RE+++R E Y + + R+ R R R Y
Sbjct: 16 RRRAINRRREMYRRREMYRRREMYRRREMYRRREMYRRREMY 57
>SB_17338| Best HMM Match : LRR_2 (HMM E-Value=0.34)
Length = 743
Score = 28.3 bits (60), Expect = 5.9
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Frame = -1
Query: 501 LNFSPTVKISWMRSSTQIMLCLWSL-FSTMLLEVIGIRCPLSLANPRLYTNSRTLFKLGY 325
L++S KI + + +T CLW L ++ GI+ PL +A PR+ ++ L LG
Sbjct: 369 LDWSGEDKIKFFKKATG---CLWPPEILKELGDIFGIKDPLKVATPRVLRRNQKL--LGM 423
Query: 324 PQ 319
P+
Sbjct: 424 PE 425
>SB_17889| Best HMM Match : Patched (HMM E-Value=0.14)
Length = 925
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -3
Query: 646 YLNHPPEKIVESCLRGYQSLPRRHNEW 566
++ +K+ SC G+Q+ P HN W
Sbjct: 785 FMQEKMKKMPPSCRNGFQATPTAHNAW 811
>SB_13893| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 77
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 15 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNY 140
R + ++REI++R E Y + + R+ RL R R Y
Sbjct: 27 RRREMYRRREIYRRREMYRRREMYRRREMYRLREMYRRREMY 68
>SB_8804| Best HMM Match : RGS (HMM E-Value=1.5e-37)
Length = 712
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +3
Query: 87 KERDEIRLARQARNRGNYYVP 149
K RD +AR+ R+RG YY+P
Sbjct: 483 KIRDTSSIARETRSRGPYYLP 503
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,471,443
Number of Sequences: 59808
Number of extensions: 480603
Number of successful extensions: 1127
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 994
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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