Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30907
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   126   1e-29
AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical ...    29   2.2  
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical pr...    29   2.9  
AL032626-14|CAA21534.1|  163|Caenorhabditis elegans Hypothetical...    29   2.9  
AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.      29   2.9  
AF016685-3|AAG24145.2|  422|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical p...    28   6.8  
U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.        28   6.8  

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  126 bits (305), Expect = 1e-29
 Identities = 63/128 (49%), Positives = 83/128 (64%)
 Frame = +2

Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
           VFV+LNKAT+ +LRI EPY+AWGYPN K++ +L+YKRG+AK+ G R+PIT N+IVE+ L 
Sbjct: 117 VFVKLNKATLPLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLG 176

Query: 437 KHNIICVEDLIHEIFTVGEKFKYAVISCGPSN*TIQLVVGARRPFIMSTGETLVTAKTRF 616
           K NIIC+EDL HEI TVG  FK A     P           ++      G      + + 
Sbjct: 177 KFNIICLEDLAHEIATVGPHFKEATNFLWPFKLNNPTGGWTKKTNHFVEGGDFGNREDQI 236

Query: 617 NDLLRRMV 640
           N+LLR+MV
Sbjct: 237 NNLLRKMV 244



 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 31/75 (41%), Positives = 47/75 (62%)
 Frame = +3

Query: 30  KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWYQPSFTE 209
           +KK + FKRAE+YV+EYR  +++ +RL R+A  +G++YVP   ++              +
Sbjct: 41  EKKTQYFKRAEKYVQEYRNAQKEGLRLKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPK 100

Query: 210 VRKVLQLFRLRQINN 254
            RK LQ+ RLRQINN
Sbjct: 101 PRKALQILRLRQINN 115


>AF067940-8|AAC19200.1|  518|Caenorhabditis elegans Hypothetical
           protein F36F12.1 protein.
          Length = 518

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +3

Query: 135 NYY--VPX*SQIGICHTNPWYQPSFTEV-RKVLQLFRLRQINN 254
           NYY  V    Q+GI  T PW  P F++V R  L+  R  ++ N
Sbjct: 208 NYYQMVRELGQLGIVTTQPWLTPKFSQVARPFLEPSRNSELRN 250


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical
           protein F20C5.2b protein.
          Length = 1130

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 389 QRIPIT-SNSIVEKRLHKHNI-ICVEDLIHEIFTVGEKFKYAVISCGPSN*TIQLVVGAR 562
           +R PI+ S S VE  + +  I  C E+++  +F+  E+F   V    PS  +  +++ AR
Sbjct: 661 RRPPISGSGSFVEATIPEETIRFCGENVV--VFSALERFVPEVTDSDPSTFSNSMMMSAR 718

Query: 563 RPFI 574
           RP I
Sbjct: 719 RPSI 722


>Z68161-6|CAA92295.2|  782|Caenorhabditis elegans Hypothetical
           protein F20C5.2a protein.
          Length = 782

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 389 QRIPIT-SNSIVEKRLHKHNI-ICVEDLIHEIFTVGEKFKYAVISCGPSN*TIQLVVGAR 562
           +R PI+ S S VE  + +  I  C E+++  +F+  E+F   V    PS  +  +++ AR
Sbjct: 675 RRPPISGSGSFVEATIPEETIRFCGENVV--VFSALERFVPEVTDSDPSTFSNSMMMSAR 732

Query: 563 RPFI 574
           RP I
Sbjct: 733 RPSI 736


>AL032626-14|CAA21534.1|  163|Caenorhabditis elegans Hypothetical
           protein Y37D8A.16 protein.
          Length = 163

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -1

Query: 522 PQEITAYLNFSPTVKISWMRSSTQIMLCLWSLFSTMLLEVIGIRCPLS 379
           P  +TAY++ +  + I ++ S+  ++ CL S+  + LL   G   PL+
Sbjct: 30  PAYVTAYISINYDIVIIYIVSALTLLYCLVSILMSFLLAKRGEDTPLT 77


>AF149286-1|AAF99085.1|  782|Caenorhabditis elegans KRP95 protein.
          Length = 782

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = +2

Query: 389 QRIPIT-SNSIVEKRLHKHNI-ICVEDLIHEIFTVGEKFKYAVISCGPSN*TIQLVVGAR 562
           +R PI+ S S VE  + +  I  C E+++  +F+  E+F   V    PS  +  +++ AR
Sbjct: 675 RRPPISGSGSFVEATIPEETIRFCGENVV--VFSALERFVPEVTDSDPSTFSNSMMMSAR 732

Query: 563 RPFI 574
           RP I
Sbjct: 733 RPSI 736


>AF016685-3|AAG24145.2|  422|Caenorhabditis elegans Hypothetical
           protein F59E11.11 protein.
          Length = 422

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -1

Query: 627 RRSLNLVFAVTKVSPVDIMNGLLAPTTSWIVQFEGPQEITAYLNFS 490
           ++SL+L+    K     +    L  T +W++ F+G +E+  +  FS
Sbjct: 194 QKSLSLIKCYGKEETCSLWEAQLTKTATWLMYFDGFRELPFHQKFS 239


>Z79755-10|CAB02109.1| 2034|Caenorhabditis elegans Hypothetical
            protein F43G9.6 protein.
          Length = 2034

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 466  HP*DLHCWRKVQVRGNFLWPFKLNNPTGGWRKKTIHY 576
            H  D H +R +   G F W F LN     W KK + Y
Sbjct: 1741 HKTDTH-FRVLDGTGEFNWRFLLNFDYNPWEKKVVAY 1776


>U57652-1|AAB02243.1| 2034|Caenorhabditis elegans FER-1 protein.
          Length = 2034

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 466  HP*DLHCWRKVQVRGNFLWPFKLNNPTGGWRKKTIHY 576
            H  D H +R +   G F W F LN     W KK + Y
Sbjct: 1741 HKTDTH-FRVLDGTGEFNWRFLLNFDYNPWEKKVVAY 1776


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,870,670
Number of Sequences: 27780
Number of extensions: 350736
Number of successful extensions: 923
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)