Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30907
(663 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 128 4e-30
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 128 4e-30
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 126 1e-29
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 126 1e-29
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 126 1e-29
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 124 4e-29
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 88 4e-18
At3g52860.1 68416.m05825 expressed protein 29 2.1
At4g33180.1 68417.m04726 hydrolase, alpha/beta fold family prote... 28 6.4
At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein beta-1,... 27 8.4
At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein beta-1,... 27 8.4
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 128 bits (308), Expect = 4e-30
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L
Sbjct: 120 VFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALG 179
Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
KH IICVEDLIHEI TVG FK A
Sbjct: 180 KHGIICVEDLIHEIMTVGPHFKEA 203
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +3
Query: 15 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWYQ 194
+ +++ ++ IFKRAEQY KEY K+ + IRL R+A+ +G +YV +++
Sbjct: 39 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 98
Query: 195 PSFTEVRKVLQLFRLRQINN 254
+ +K+LQL RLRQI N
Sbjct: 99 AIDPKTKKILQLLRLRQIFN 118
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1
Query: 511 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKI 615
NFLWPF+L P GG +KK HYV+GGD GNRE+ I
Sbjct: 205 NFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFI 239
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 128 bits (308), Expect = 4e-30
Identities = 58/84 (69%), Positives = 70/84 (83%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VF+++NKATVNMLR EPY+ +GYPNLKSV+EL+YKRG+ KL+ QRI +T NSIV++ L
Sbjct: 115 VFLKVNKATVNMLRRVEPYVTYGYPNLKSVKELIYKRGYGKLNHQRIALTDNSIVDQALG 174
Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
KH IICVEDLIHEI TVG FK A
Sbjct: 175 KHGIICVEDLIHEIMTVGPHFKEA 198
Score = 58.4 bits (135), Expect = 4e-09
Identities = 30/80 (37%), Positives = 48/80 (60%)
Frame = +3
Query: 15 RSSAIKKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWYQ 194
+ +++ ++ IFKRAEQY KEY K+ + IRL R+A+ +G +YV +++
Sbjct: 34 KKKSVEARKLIFKRAEQYAKEYAEKDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGIN 93
Query: 195 PSFTEVRKVLQLFRLRQINN 254
+ +K+LQL RLRQI N
Sbjct: 94 AIDPKTKKILQLLRLRQIFN 113
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1
Query: 511 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKI 615
NFLWPF+L P GG +KK HYV+GGD GNRE+ I
Sbjct: 200 NFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFI 234
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 126 bits (304), Expect = 1e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L
Sbjct: 117 VFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLG 176
Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
KH IICVEDLIHEI TVG FK A
Sbjct: 177 KHGIICVEDLIHEIMTVGPHFKEA 200
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/75 (40%), Positives = 47/75 (62%)
Frame = +3
Query: 30 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWYQPSFTE 209
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV +++ +
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 210 VRKVLQLFRLRQINN 254
+K+LQL RLRQI N
Sbjct: 101 TKKILQLLRLRQIFN 115
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1
Query: 511 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKI 615
NFLWPF+L P GG +KK HYV+GGD GNRE+ I
Sbjct: 202 NFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFI 236
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 126 bits (304), Expect = 1e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L
Sbjct: 117 VFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLG 176
Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
KH IICVEDLIHEI TVG FK A
Sbjct: 177 KHGIICVEDLIHEIMTVGPHFKEA 200
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/75 (40%), Positives = 47/75 (62%)
Frame = +3
Query: 30 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWYQPSFTE 209
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV +++ +
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 210 VRKVLQLFRLRQINN 254
+K+LQL RLRQI N
Sbjct: 101 TKKILQLLRLRQIFN 115
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1
Query: 511 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKI 615
NFLWPF+L P GG +KK HYV+GGD GNRE+ I
Sbjct: 202 NFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFI 236
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 126 bits (304), Expect = 1e-29
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VF+++NKAT+NMLR EPY+ +GYPNLKSV+EL+YKRGF KL+ QR +T NSIV++ L
Sbjct: 117 VFLKVNKATINMLRRVEPYVTYGYPNLKSVKELIYKRGFGKLNHQRTALTDNSIVDQGLG 176
Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
KH IICVEDLIHEI TVG FK A
Sbjct: 177 KHGIICVEDLIHEIMTVGPHFKEA 200
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/75 (40%), Positives = 47/75 (62%)
Frame = +3
Query: 30 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWYQPSFTE 209
+K++ IF RA+QY KEY+ KER+ I+L R+A+ +G +YV +++ +
Sbjct: 41 EKRKLIFNRAKQYSKEYQEKERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 100
Query: 210 VRKVLQLFRLRQINN 254
+K+LQL RLRQI N
Sbjct: 101 TKKILQLLRLRQIFN 115
Score = 56.0 bits (129), Expect = 2e-08
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1
Query: 511 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKI 615
NFLWPF+L P GG +KK HYV+GGD GNRE+ I
Sbjct: 202 NFLWPFQLKAPLGGMKKKRNHYVEGGDAGNRENFI 236
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 124 bits (300), Expect = 4e-29
Identities = 56/84 (66%), Positives = 69/84 (82%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VF+++NKAT+NMLR EPY+ +G+PNLKSV+EL+YKRG+ KL+ QRI +T NSIVE+ L
Sbjct: 115 VFLKVNKATMNMLRRVEPYVTYGFPNLKSVKELIYKRGYGKLNHQRIALTDNSIVEQALG 174
Query: 437 KHNIICVEDLIHEIFTVGEKFKYA 508
KH IIC EDLIHEI TVG FK A
Sbjct: 175 KHGIICTEDLIHEILTVGPHFKEA 198
Score = 55.6 bits (128), Expect = 3e-08
Identities = 23/35 (65%), Positives = 27/35 (77%)
Frame = +1
Query: 511 NFLWPFKLNNPTGGWRKKTIHYVDGGDFGNREDKI 615
NFLWPF+L P GG +KK HYV+GGD GNRE+ I
Sbjct: 200 NFLWPFQLKAPLGGLKKKRNHYVEGGDAGNRENFI 234
Score = 55.2 bits (127), Expect = 4e-08
Identities = 30/75 (40%), Positives = 45/75 (60%)
Frame = +3
Query: 30 KKKREIFKRAEQYVKEYRIKERDEIRLARQARNRGNYYVPX*SQIGICHTNPWYQPSFTE 209
+ ++ IFKRAEQY KEY KE++ I L R+A+ +G +YV +++ +
Sbjct: 39 ENRKLIFKRAEQYSKEYAEKEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPK 98
Query: 210 VRKVLQLFRLRQINN 254
+K+LQL RLRQI N
Sbjct: 99 TKKILQLLRLRQIFN 113
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 88.2 bits (209), Expect = 4e-18
Identities = 43/128 (33%), Positives = 73/128 (57%), Gaps = 1/128 (0%)
Frame = +2
Query: 257 VFVRLNKATVNMLRIAEPYIAWGYPNLKSVRELVYKRGFAKLSGQRIPITSNSIVEKRLH 436
VF + + L +PY+ +GYPN KSV++L+YK+G + G +P+T N+I+E+ L
Sbjct: 119 VFAKATDSLFQKLLKVQPYVTYGYPNDKSVKDLIYKKGCTIIEGNPVPLTDNNIIEQALG 178
Query: 437 KHNIICVEDLIHEIFTVGEKFKYAVISCGPSN*TIQLV-VGARRPFIMSTGETLVTAKTR 613
+H I+ +EDL++EI VG+ F+ + GP + V R+ + S G + +
Sbjct: 179 EHKILGIEDLVNEIARVGDHFREVMRFLGPLKLNKPVADVLHRKKQVFSEGGDTGNREDK 238
Query: 614 FNDLLRRM 637
NDL+ +M
Sbjct: 239 INDLISKM 246
Score = 30.7 bits (66), Expect = 0.90
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +3
Query: 30 KKKREIFKRAEQYVKEYRIKERDEIRLARQAR 125
KKK KR E +V E+R KE D IR+ ++ +
Sbjct: 43 KKKVSDIKRPEDFVHEFRAKEVDMIRMKQRVK 74
>At3g52860.1 68416.m05825 expressed protein
Length = 156
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 6 LKRRSSAIKKKREIFKRAEQYVKEYRIKERDEI 104
LK + IKK +F+ +++ VKE K RDE+
Sbjct: 121 LKTKDELIKKHMRLFQESQKLVKEQIEKHRDEL 153
>At4g33180.1 68417.m04726 hydrolase, alpha/beta fold family protein
low similarity to
2-hydroxy-6-oxo-7-methylocta-2,4-dienoate hydrolase
[Pseudomonas fluorescens] GI:1871461; contains Pfam
profile PF00561: alpha/beta hydrolase fold
Length = 307
Score = 27.9 bits (59), Expect = 6.4
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 487 WRKVQVRGNFLWPFKLNNPTGGWRKKTIHYVDGGDFGNRED-KIQRSSQE 633
WR V++ + LW +NN RK+ I + G FG E+ I SQE
Sbjct: 199 WRLVRMFPDALWNDVINNLYKKNRKEKIELLKGVTFGRSENLNIDSLSQE 248
>At4g38240.2 68417.m05401 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 499 QVRGNFLWPFKLNNPTGGWRKKTIHYVDGGDF 594
Q +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
>At4g38240.1 68417.m05400 alpha-1,3-mannosyl-glycoprotein
beta-1,2-N-acetylglucosaminyltransferase, putative
similar to N-acetylglucosaminyltransferase I from
Arabidopsis thaliana [gi:5139335]; contains AT-AC
non-consensus splice sites at intron 13
Length = 444
Score = 27.5 bits (58), Expect = 8.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 499 QVRGNFLWPFKLNNPTGGWRKKTIHYVDGGDF 594
Q +L P KLN+ T W+ K + Y+ G++
Sbjct: 321 QFFSQYLEPIKLNDVTVDWKAKDLGYLTEGNY 352
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,081,474
Number of Sequences: 28952
Number of extensions: 325750
Number of successful extensions: 871
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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