Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30906
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual        29   0.64 
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    26   5.9  

>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 176

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 20/58 (34%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
 Frame = +2

Query: 284 LCLLATQI--FELNKSIWYSIKILCFNSNSPVYLHIQVYINSHKAEYWH--SCSKHHY 445
           LC L   +  F L  + +YSI  LCF S   + LH+   I SH   ++H  + + +HY
Sbjct: 18  LCTLVISVPFFFLQMTPFYSI--LCFLSFFALLLHLPCSIYSHTLHFFHHFTIACYHY 73


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +2

Query: 368 PVYLHIQVYINSHKAEYWHSCSKHHYKENLKSPHRSE 478
           P   HI+  I +H+  Y    S+ H +EN     R E
Sbjct: 634 PTLGHIESSIENHRPRYSRQNSESHLRENSVERRRRE 670


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,882,986
Number of Sequences: 5004
Number of extensions: 59724
Number of successful extensions: 117
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)