Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30906
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379           30   2.0  
08_01_1052 + 10712380-10712545,10713229-10713386,10713495-10714199     28   6.2  
01_07_0238 + 42209407-42209964,42210039-42210561,42212577-422126...    28   8.1  

>09_02_0407 - 8635717-8636122,8636342-8636729,8637040-8637379
          Length = 377

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = -1

Query: 259 HECARSDSLTLPNSQMQKQD*LIVSVHHYMDITYPCLHITLTIVV 125
           H+ A+ D+L  PN+Q Q+QD   +  H+ + I    + + ++++V
Sbjct: 170 HDFAKQDNLKPPNNQRQEQDRCQLPNHNILAIVILSVLVAMSVLV 214


>08_01_1052 + 10712380-10712545,10713229-10713386,10713495-10714199
          Length = 342

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
 Frame = +2

Query: 314 LNKSIWYSIKIL-----CFNSNSPVYLHIQVYINSHKAEYWHSCSKHHYKENLKSPHRSE 478
           +N S W+ +K L      +   +  Y+H++   ++H   Y    ++  Y    ++ HR E
Sbjct: 211 VNASTWHVLKYLDGSARTYADAAQAYVHVRDVADAHARAYESPAARGRYLCAGRTLHRGE 270

Query: 479 VC 484
           VC
Sbjct: 271 VC 272


>01_07_0238 + 42209407-42209964,42210039-42210561,42212577-42212665,
            42212981-42213191,42213265-42213446,42213573-42213812,
            42214691-42214878,42215230-42215323,42215407-42215463,
            42215552-42215686,42216460-42216525,42216745-42216858,
            42217849-42218010,42218093-42218221,42218323-42218424,
            42219428-42219504,42219600-42219957
          Length = 1094

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 18/55 (32%), Positives = 28/55 (50%)
 Frame = +2

Query: 284  LCLLATQIFELNKSIWYSIKILCFNSNSPVYLHIQVYINSHKAEYWHSCSKHHYK 448
            L LL  +  E+ K+    +K+L  + +S   L +Q  I S     W S +KHH+K
Sbjct: 861  LVLLKHKAIEVIKASLGFVKVLVTSLHSEKLLELQADIMSGILP-WSSVTKHHFK 914


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,821,350
Number of Sequences: 37544
Number of extensions: 317146
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)