Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30906
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106577-8|AAC78184.1|  288|Caenorhabditis elegans Hypothetical ...    32   0.34 
AL021472-2|CAA16298.1|  249|Caenorhabditis elegans Hypothetical ...    28   5.5  
Z71258-3|CAA95778.1|  187|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF106577-8|AAC78184.1|  288|Caenorhabditis elegans Hypothetical
           protein F46F5.4 protein.
          Length = 288

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = -2

Query: 651 SPKMVAFRKKIMDIFFGREFCDLQFCTGVILRKNSPFR*KSQKTHFFDFD-PVPNF*HTS 475
           S K+  F K  +DI F   FC+ +  +G  L +N+PF   +   +F D++  +PN  H +
Sbjct: 58  SRKIEEFLKPGIDITFVNRFCNWEIASGFYLARNTPFA-INLLNNFADYESKLPNSFHGT 116

Query: 474 E 472
           +
Sbjct: 117 D 117


>AL021472-2|CAA16298.1|  249|Caenorhabditis elegans Hypothetical
           protein Y17D7B.2 protein.
          Length = 249

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = +3

Query: 519 EFFAIFSETVSFFAKLPQ---YKIVDHKILYQKIYP 617
           EF   FSE    FA+ P+   YK+ DH +  +KI+P
Sbjct: 199 EFGHEFSENNELFAETPRQKWYKLEDHLVENRKIFP 234


>Z71258-3|CAA95778.1|  187|Caenorhabditis elegans Hypothetical
           protein C01H6.3 protein.
          Length = 187

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
 Frame = +3

Query: 216 CEFGNVKESLR---AHSCIKYRPTCFFAC 293
           C F N + SL+   +H C+++ PT  F C
Sbjct: 159 CRFCNARISLQHAQSHQCVRFEPTIEFYC 187


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,772,506
Number of Sequences: 27780
Number of extensions: 331706
Number of successful extensions: 753
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)