Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30906
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    23   2.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    23   2.1  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.8  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.8  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   6.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   6.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.5  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 489 NLARGQSQKNEFFAIFSETVSFFAKLPQYK 578
           NLA  +  KN FF +F +  S   K P +K
Sbjct: 448 NLAAEKKDKNSFFNMFKKFAS-LKKSPYFK 476


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 489 NLARGQSQKNEFFAIFSETVSFFAKLPQYK 578
           NLA  +  KN FF +F +  S   K P +K
Sbjct: 448 NLAAEKKDKNSFFNMFKKFAS-LKKSPYFK 476


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 455 DFLYNDVLNNYANIQLYGNLCKLECVNRP 369
           ++ Y +  NNY + +LY N+  +E +  P
Sbjct: 308 NYNYKNYNNNYNSKKLYYNIINIEQIPVP 336


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 455 DFLYNDVLNNYANIQLYGNLCKLECVNRP 369
           ++ Y +  NNY + +LY N+  +E +  P
Sbjct: 319 NYNYKNYNNNYNSKKLYYNIINIEQIPVP 347


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/30 (26%), Positives = 15/30 (50%)
 Frame = +2

Query: 353 FNSNSPVYLHIQVYINSHKAEYWHSCSKHH 442
           F   + V L I +++ SH+  +W   +  H
Sbjct: 8   FEVIAAVLLTILIFVTSHRPAWWFWTATSH 37


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 443 NDVLNNYANIQLYGNLCKLECVNRP 369
           N+  NNY N +LY N+  +E +  P
Sbjct: 315 NNNYNNYNNKKLYYNINYIEQIPVP 339


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 616 HNFFPKSHHFGRYNV 660
           HNFF     +G YN+
Sbjct: 214 HNFFYFDPRYGNYNI 228


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,664
Number of Sequences: 438
Number of extensions: 4395
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)