Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30905
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0928 + 24488891-24489675,24490369-24490421,24490479-244912...    30   1.4  
10_01_0069 + 890634-890941,892146-892395,893146-893175,894956-89...    30   1.4  
12_01_0559 + 4527769-4527924,4528038-4528129,4528799-4528905,452...    30   1.9  
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476...    29   3.3  
09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219     28   5.7  
08_02_0520 - 18121561-18121821,18122216-18122470,18122560-181227...    28   5.7  
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440...    27   9.9  

>12_02_0928 +
           24488891-24489675,24490369-24490421,24490479-24491229,
           24491322-24491533,24491780-24492570,24492686-24492784
          Length = 896

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
 Frame = -1

Query: 541 VITN*IPCIIYIESRIST-STMSAKVLILHSELEQILNEMQKFTNIITLVSSWLSVSCLP 365
           +I N    + Y+   I+T   + A VLI +  +   L+ +  FT +  L S WL    LP
Sbjct: 619 LILNFASSVYYLPPFIATMQNLKALVLINYGTISATLDNLSAFTTLSDLRSLWLEKITLP 678

Query: 364 DL 359
            L
Sbjct: 679 PL 680


>10_01_0069 +
           890634-890941,892146-892395,893146-893175,894956-895135,
           895418-895669
          Length = 339

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +1

Query: 133 MRFINHMLDVSITKENTLSKAAKNVGIPDWIVELRHDTAHKIICL 267
           +R++    D  I K    S+  +N+GI DW  EL +D  HKI  L
Sbjct: 259 LRWVYEQGDCVIVKSFNKSRLRENLGIFDW--ELTNDDRHKISTL 301


>12_01_0559 +
           4527769-4527924,4528038-4528129,4528799-4528905,
           4528987-4529042,4529196-4529346,4530223-4530528,
           4530753-4531597
          Length = 570

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 10/27 (37%), Positives = 22/27 (81%)
 Frame = +1

Query: 181 TLSKAAKNVGIPDWIVELRHDTAHKII 261
           ++S+ A+ VGIP  +V++RH+++H+ +
Sbjct: 99  SISELAEAVGIPRVLVDIRHESSHRTL 125


>10_08_0680 -
           19846481-19846767,19847192-19847379,19847467-19847666,
           19847799-19848060,19848652-19848758
          Length = 347

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 263 QIILWAVSCLNSTIQSGIPTFFAALDNVFSLVMDT 159
           Q +LWAV  + +   S     F  + NVFS+V++T
Sbjct: 266 QFLLWAVWAVMTKHPSCFKILFVIIGNVFSIVLET 300


>09_02_0553 - 10565450-10565529,10565652-10565792,10565793-10566219
          Length = 215

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = +1

Query: 1   ARCPSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKEN 180
           A C   P  + S  ++     Q L    +N  D  L  A  +   + ++H++D+  TK+N
Sbjct: 32  ATCGDGPGYLRSAGVIYS-RSQHLMLVQNNNGDTPLHCAVRAGHSKMVDHLIDLVETKDN 90

Query: 181 TLSKA 195
           + S A
Sbjct: 91  SPSSA 95


>08_02_0520 - 18121561-18121821,18122216-18122470,18122560-18122731,
            18122824-18123105,18123159-18123292,18123425-18123508,
            18123611-18123901,18123982-18124314,18124620-18124750,
            18124826-18124930,18125011-18125167,18125248-18125351,
            18125442-18125602,18125800-18126116,18126369-18126650,
            18127011-18127312,18127609-18127699,18127771-18127824,
            18128110-18128186,18128279-18128438,18128545-18128629,
            18129059-18129367,18129514-18129890
          Length = 1507

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 279  AVTMKADYFMGSVMSQFHYPIWNTYIFRGF 190
            AV +   Y + S++S F Y IWN  +F GF
Sbjct: 1389 AVGLTPSYNIASIVSSFFYGIWN--LFSGF 1416


>04_04_0111 -
           22842337-22842648,22843008-22843402,22843732-22844073,
           22844154-22844282,22844402-22844514,22844596-22844667,
           22844783-22844859,22844978-22845052,22845058-22845121,
           22845332-22845403,22845496-22845628,22846859-22846961
          Length = 628

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = -1

Query: 502 SRISTSTMSAKVLILHSELEQILNEMQKFTNIITLVSSWLSVSCLPDL*SVIR 344
           SR+  +T    +  L   L+   N +Q +   +    +W  V+C PD  SVIR
Sbjct: 27  SRVGANTEGDALYSLRQSLKDANNVLQSWDPTLVNPCTWFHVTCNPDN-SVIR 78


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,319,464
Number of Sequences: 37544
Number of extensions: 276285
Number of successful extensions: 725
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)