Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30905
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.62 
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    30   1.4  
SB_57910| Best HMM Match : SAPS (HMM E-Value=2.8)                      30   1.4  
SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)                 28   5.8  
SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.8  

>SB_57099| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2509

 Score = 31.5 bits (68), Expect = 0.62
 Identities = 9/37 (24%), Positives = 26/37 (70%)
 Frame = -1

Query: 484  TMSAKVLILHSELEQILNEMQKFTNIITLVSSWLSVS 374
            T+  K++   S+L+++  + +KF N++ ++++WL+ +
Sbjct: 2104 TLCVKLMNTSSKLDELQEQSEKFYNVLRIITTWLNTT 2140


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 21/70 (30%), Positives = 35/70 (50%)
 Frame = +1

Query: 67   DLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENTLSKAAKNVGIPDWIVELRHDT 246
            D+ S D N      R+  S +I+  +N  LD   TKE TL   A++VG+P  + +     
Sbjct: 1477 DILSGDKNST---FRVTESGSII--LNKSLDYEQTKEYTLLLRARDVGLPPLVSDRNATV 1531

Query: 247  AHKIICLHCH 276
              +++ L+ H
Sbjct: 1532 LIRVVDLNDH 1541


>SB_57910| Best HMM Match : SAPS (HMM E-Value=2.8)
          Length = 406

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/37 (45%), Positives = 21/37 (56%)
 Frame = -3

Query: 263 QIILWAVSCLNSTIQSGIPTFFAALDNVFSLVMDTSN 153
           ++ L A   LNS   +  P+FF ALD V SL  D SN
Sbjct: 59  RVSLPACHLLNSLTSTVRPSFFIALDKVQSLYRDISN 95


>SB_12964| Best HMM Match : RVT_1 (HMM E-Value=5.6e-31)
          Length = 1273

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 545 QCYHQLNPLHHLYRISHINIHYVSQSF 465
           +CYH +NPL  L +IS    HY   +F
Sbjct: 154 RCYHHMNPLKLLQKISSY-FHYQDSAF 179


>SB_50939| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2337

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = +1

Query: 34   STLILLQVHIQDLNSPDDNGNDHVLRLAYSSAI---MRFINHMLDVSITKEN 180
            +T + L+  I  L +P D G+DH+    Y S+    ++  +  L+V +TK+N
Sbjct: 1889 ATDVALEKGIYILYTPSDEGDDHIEWYIYPSSTYIDLKKTHIRLEVKLTKDN 1940


>SB_2557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 627

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 17/70 (24%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
 Frame = +3

Query: 324 YWKEHKLLITDYKSGRQETDSQEETRVMILVNFCIS---LSICSNSECKIKTLADIVDVD 494
           +W+  K+L T   + RQ+  +QE   ++IL++  +S   + +    E ++K + D V  D
Sbjct: 530 FWRVQKMLHTTSNALRQQIMNQEGVYIVILIDVQLSSMFVLLARRLEKEVKQILDEVGGD 589

Query: 495 MRDSI*MMQG 524
             +   +++G
Sbjct: 590 EGEKARLIRG 599


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,397,101
Number of Sequences: 59808
Number of extensions: 349264
Number of successful extensions: 715
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)