Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30905
         (658 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL032655-4|CAB63413.2|  485|Caenorhabditis elegans Hypothetical ...    35   0.058
AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical...    30   1.3  
U80029-19|AAB37598.1|  139|Caenorhabditis elegans Hypothetical p...    28   5.1  
AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical ...    27   8.9  

>AL032655-4|CAB63413.2|  485|Caenorhabditis elegans Hypothetical
           protein Y6B3B.9 protein.
          Length = 485

 Score = 34.7 bits (76), Expect = 0.058
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 2/52 (3%)
 Frame = +1

Query: 106 LRLAYSSAIMRFINHMLDVSITKEN--TLSKAAKNVGIPDWIVELRHDTAHK 255
           LR  +  AI+RF+N++ ++  T      +  A K+ GIP  IV++RH   H+
Sbjct: 86  LRSKHGYAIVRFVNYVNEMGQTGATLKNMVHAVKSFGIPKKIVDIRHAITHQ 137


>AL161712-11|CAC70135.1| 2870|Caenorhabditis elegans Hypothetical
            protein Y66D12A.14 protein.
          Length = 2870

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/72 (20%), Positives = 36/72 (50%)
 Frame = +1

Query: 10   PSLPSGIESTLILLQVHIQDLNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITKENTLS 189
            P+LP+ +ES L  +   +  LN P+ + +DH   +   S ++  + H+++  +     + 
Sbjct: 2579 PTLPNSLESDLSSIWTSL--LNCPEPSPSDHFFLIGGHSLLLVRLRHLIETKLGISLKVP 2636

Query: 190  KAAKNVGIPDWI 225
            +  +N+   D +
Sbjct: 2637 EILQNLKFSDML 2648


>U80029-19|AAB37598.1|  139|Caenorhabditis elegans Hypothetical
           protein T20D4.19 protein.
          Length = 139

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 342 LLITDYKSGRQETDSQEETRVMILVNFCISLSICSNS-ECKIKTLADIVDVDM 497
           L + DY     E D  ++T V      C SL+ C  + +C ++T +D  +V M
Sbjct: 48  LRLADYVEKMYELDMTDKTEVNEFEKSCTSLTSCLETIQCGLETQSDKKNVKM 100


>AC006830-7|AAK68613.2|  479|Caenorhabditis elegans Hypothetical
           protein ZK105.6 protein.
          Length = 479

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 393 ETRVMILVNFCISLSICSNSECKIKTLADIVDVDMRDSI*M 515
           +TR++ LV  C ++  C NS C    L   +  DM ++I M
Sbjct: 145 DTRILKLVEQCKNVQTCMNSTCNAPDLDRRMADDMCEAIEM 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,069,725
Number of Sequences: 27780
Number of extensions: 275095
Number of successful extensions: 761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)