Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30905
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12220.1 68418.m01434 las1-like family protein similar to Las...    50   1e-06
At5g37450.1 68418.m04507 leucine-rich repeat transmembrane prote...    30   1.2  
At5g56970.1 68418.m07111 FAD-binding domain-containing protein /...    29   3.6  
At4g13670.1 68417.m02125 peptidoglycan-binding domain-containing...    28   6.3  

>At5g12220.1 68418.m01434 las1-like family protein similar to Las1p
           [Saccharomyces cerevisiae] GI:495504; contains Pfam
           profile PF04031: Las1-like
          Length = 611

 Score = 50.4 bits (115), Expect = 1e-06
 Identities = 24/88 (27%), Positives = 56/88 (63%), Gaps = 7/88 (7%)
 Frame = +1

Query: 13  SLPSGIESTLILLQVHIQD------LNSPDDNGNDHVLRLAYSSAIMRFINHMLDVSITK 174
           SLP+ ++ T  L+++ ++D        S D   ++H+L++ Y   I+R +N +++ +  +
Sbjct: 69  SLPAPVDVTCSLIEIQLKDGFIPREKQSADALYSEHLLQMLYCMGILRLVNCVIEKTRRR 128

Query: 175 EN-TLSKAAKNVGIPDWIVELRHDTAHK 255
           E+ +++ AA+ +GIP  +++LRH+ +H+
Sbjct: 129 EDVSIADAARAIGIPRKLIDLRHEGSHR 156



 Score = 31.5 bits (68), Expect = 0.51
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 282 RDATQFGLDWLKSNYWKEHKLLITDYKSG 368
           RDA    L+WLKS YW++ K  I   + G
Sbjct: 165 RDAADEALEWLKSYYWEQQKYQIPLKRDG 193


>At5g37450.1 68418.m04507 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 935

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = -1

Query: 520 CIIYIESRISTSTMSAKVL-ILHSELEQILNEMQKFTNIITLVSSWLSVSCLPD 362
           C+  ++++  T       L  +H +L+  LN +Q +       S+W  V C+PD
Sbjct: 18  CLSLLDAQEITHPTDVSALQYVHRKLKDPLNHLQDWKKTDPCASNWTGVICIPD 71


>At5g56970.1 68418.m07111 FAD-binding domain-containing protein /
           cytokinin oxidase family protein similar to cytokinin
           oxidase from Zea mays [gi:3882018] [gi:3341978]
          Length = 523

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -1

Query: 130 SQMNMPNEAHDHFHYHRGYSSLEYGLAVILK 38
           SQ++ P  A  H H HRG +S + G+ V ++
Sbjct: 92  SQLSFPLAARGHGHSHRGQASAKDGVVVNMR 122


>At4g13670.1 68417.m02125 peptidoglycan-binding domain-containing
           protein similar to spore cortex-lytic enzyme prepeptide
           (GI:1644192) [Bacillus cereus]; contains Pfam PF01471:
           Putative peptidoglycan binding domain; contains Pfam
           PF00684 : DnaJ central domain (4 repeats)
          Length = 387

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/44 (31%), Positives = 26/44 (59%)
 Frame = -1

Query: 505 ESRISTSTMSAKVLILHSELEQILNEMQKFTNIITLVSSWLSVS 374
           ++RIS S +SA  ++L S  EQI+ E+++    + +    + VS
Sbjct: 124 KNRISESGLSATPMVLESTREQIVEEVEEEEKRVIIAEEKVRVS 167


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,079,007
Number of Sequences: 28952
Number of extensions: 246082
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)