BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS30903 (696 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|... 30 0.36 SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 26 5.9 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 25 7.8 SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 7.8 SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F... 25 7.8 >SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|||Manual Length = 578 Score = 29.9 bits (64), Expect = 0.36 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = +3 Query: 240 WWLYRKDPLDNTYTRNMYIVKH 305 WWLYRK PL + + + ++H Sbjct: 112 WWLYRKSPLKSWWIERRHHIRH 133 >SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schizosaccharomyces pombe|chr 2|||Manual Length = 984 Score = 25.8 bits (54), Expect = 5.9 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Frame = +3 Query: 180 GFGHCS----CLLL--RECASGE---TVGWWLYRKDPLDNTYTRNMYIVKH*WQYV 320 GFGH + C+ L +E A+ T+ W + L NTYT + KH W V Sbjct: 233 GFGHSARVWRCVFLPNKEIATVSEDLTLRLWTWNDKTLTNTYTYTGHRGKHIWSLV 288 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 25.4 bits (53), Expect = 7.8 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%) Frame = +1 Query: 577 QYFQLPENNWAHG*FSG--PSXLNIKDLFGQWTLVWQS 684 Q+ Q ENNW+ G F G S + +W W S Sbjct: 1619 QWQQEIENNWSEGSFDGVLQSYMYATQFDSKWYKAWHS 1656 >SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 3131 Score = 25.4 bits (53), Expect = 7.8 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = +2 Query: 29 SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAHAQLCTLKQNNSW 175 S L MLS ++ +A+ +P+ ++++E L D + + L QN+S+ Sbjct: 1242 SNLPEMLSIANAFSANVDAPSVMTLLSEELYSIDTVNDAISNLSQNSSF 1290 >SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 537 Score = 25.4 bits (53), Expect = 7.8 Identities = 12/34 (35%), Positives = 16/34 (47%) Frame = +3 Query: 399 KIYSTSLSGSDSDAIYSYYYFVLYDAPRAGKPFY 500 K+Y TSLS +Y + +F D PFY Sbjct: 18 KLYYTSLSQPPKAELYPHMHFFTIDDELIYNPFY 51 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,000,288 Number of Sequences: 5004 Number of extensions: 63900 Number of successful extensions: 182 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 182 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 321151040 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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