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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30903
         (696 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    30   0.36 
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi...    26   5.9  
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    25   7.8  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.8  
SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase Clp1/F...    25   7.8  

>SPAC4A8.06c |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 578

 Score = 29.9 bits (64), Expect = 0.36
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +3

Query: 240 WWLYRKDPLDNTYTRNMYIVKH 305
           WWLYRK PL + +    + ++H
Sbjct: 112 WWLYRKSPLKSWWIERRHHIRH 133


>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 984

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
 Frame = +3

Query: 180 GFGHCS----CLLL--RECASGE---TVGWWLYRKDPLDNTYTRNMYIVKH*WQYV 320
           GFGH +    C+ L  +E A+     T+  W +    L NTYT   +  KH W  V
Sbjct: 233 GFGHSARVWRCVFLPNKEIATVSEDLTLRLWTWNDKTLTNTYTYTGHRGKHIWSLV 288


>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
            Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = +1

Query: 577  QYFQLPENNWAHG*FSG--PSXLNIKDLFGQWTLVWQS 684
            Q+ Q  ENNW+ G F G   S +       +W   W S
Sbjct: 1619 QWQQEIENNWSEGSFDGVLQSYMYATQFDSKWYKAWHS 1656


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = +2

Query: 29   SFLNTMLSNSSMNTAHYKSPAFDSIMAETLKVTDEAHAQLCTLKQNNSW 175
            S L  MLS ++  +A+  +P+  ++++E L   D  +  +  L QN+S+
Sbjct: 1242 SNLPEMLSIANAFSANVDAPSVMTLLSEELYSIDTVNDAISNLSQNSSF 1290


>SPAC1782.09c |clp1|flp1|Cdc14-related protein phosphatase
           Clp1/Flp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +3

Query: 399 KIYSTSLSGSDSDAIYSYYYFVLYDAPRAGKPFY 500
           K+Y TSLS      +Y + +F   D      PFY
Sbjct: 18  KLYYTSLSQPPKAELYPHMHFFTIDDELIYNPFY 51


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,000,288
Number of Sequences: 5004
Number of extensions: 63900
Number of successful extensions: 182
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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