Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30903
         (696 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           28   6.3  
SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  

>SB_43214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 424

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
 Frame = +1

Query: 214 NARLVKPWVGG-YTGKIRWIIPIPGIC-TL*STNGNTWGRSVLLHGV*FLSHYRRHRPEG 387
           N R     VG  Y G + WIIPI   C T    NG  +  + L+    ++S    H P  
Sbjct: 239 NGRFCPLTVGDMYLGPMSWIIPIFVACSTFGCVNGLLFSGARLV----YVSARNGHMPR- 293

Query: 388 RAMLKFILRRCLEAIPTLFILITISFFMM 474
             +L  I  +C   +P++  + TI+  M+
Sbjct: 294 --LLAMIHNKCQTPMPSIIFMNTIALIML 320


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = +3

Query: 462 VLYDAPRAGKPFYR--RTNFTARSDGQYR 542
           +LY  P AGK F R    +F ARSDG  R
Sbjct: 574 LLYRTPEAGKKFLRDNERHFQARSDGTNR 602


>SB_46461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 817

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
 Frame = -3

Query: 274 VLSSGSFRYSH--QPTVSPDAHSRSNKQEQWPNPY 176
           + SSGS R+S   Q  V    HSR   +E  P+PY
Sbjct: 345 ITSSGSSRFSRAIQADVEKLLHSREKYEEMVPSPY 379


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,746,618
Number of Sequences: 59808
Number of extensions: 502700
Number of successful extensions: 1125
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1125
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)