Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30903
         (696 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein...    29   2.4  
U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein ...    29   2.4  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    29   2.4  
AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protei...    29   2.4  
AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protei...    29   2.4  
AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protei...    29   2.4  
Z81531-7|CAB04320.1|  722|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z70271-1|CAB61041.1|  393|Caenorhabditis elegans Hypothetical pr...    28   7.3  
AF103732-1|AAD03603.1|  393|Caenorhabditis elegans Wnt homolog p...    28   7.3  
AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical ...    28   7.3  
AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical ...    27   9.7  
AF000299-10|AAC47986.1|  338|Caenorhabditis elegans Seven tm rec...    27   9.7  

>U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform c protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 YPEYVHCEALMAIRGAGVSCSTVSDFYRITEGTGQKV 388
           +P  ++CE    + G  + CST  D +R++ G G  V
Sbjct: 406 WPNDLYCERSHKVGGMLLQCSTRDDSFRVSIGCGMNV 442


>U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform b protein.
          Length = 632

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 YPEYVHCEALMAIRGAGVSCSTVSDFYRITEGTGQKV 388
           +P  ++CE    + G  + CST  D +R++ G G  V
Sbjct: 480 WPNDLYCERSHKVGGMLLQCSTRDDSFRVSIGCGMNV 516


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
            ligase protein 1,isoform a protein.
          Length = 1051

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278  YPEYVHCEALMAIRGAGVSCSTVSDFYRITEGTGQKV 388
            +P  ++CE    + G  + CST  D +R++ G G  V
Sbjct: 899  WPNDLYCERSHKVGGMLLQCSTRDDSFRVSIGCGMNV 935


>AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant d protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 YPEYVHCEALMAIRGAGVSCSTVSDFYRITEGTGQKV 388
           +P  ++CE    + G  + CST  D +R++ G G  V
Sbjct: 406 WPNDLYCERSHKVGGMLLQCSTRDDSFRVSIGCGMNV 442


>AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant c protein.
          Length = 558

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 YPEYVHCEALMAIRGAGVSCSTVSDFYRITEGTGQKV 388
           +P  ++CE    + G  + CST  D +R++ G G  V
Sbjct: 406 WPNDLYCERSHKVGGMLLQCSTRDDSFRVSIGCGMNV 442


>AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (70.9 kD) alternative
           variant b protein.
          Length = 632

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = +2

Query: 278 YPEYVHCEALMAIRGAGVSCSTVSDFYRITEGTGQKV 388
           +P  ++CE    + G  + CST  D +R++ G G  V
Sbjct: 480 WPNDLYCERSHKVGGMLLQCSTRDDSFRVSIGCGMNV 516


>Z81531-7|CAB04320.1|  722|Caenorhabditis elegans Hypothetical
           protein F36D3.8 protein.
          Length = 722

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 23/90 (25%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
 Frame = -1

Query: 309 ISASQCTYSGYRYYPADLSGIATNPRFHQTRIHV---VINRNNGRI-LIQLLFCFSVQSC 142
           + +SQ +   +RY   D    A      Q +I V   +++R  G + +   LFCF  +  
Sbjct: 297 VRSSQQSQDCFRYEIPDGVDFAKVYSPSQVQIVVFQEIVSRFRGSLEIFAKLFCFQKKII 356

Query: 141 ACASSVTFSVSAIMLSKAGLL*CAVFIELF 52
             +S+ +F +  IML+  G    ++F + F
Sbjct: 357 PVSSTYSFHIKLIMLASRGFYGYSIFSKRF 386


>Z70271-1|CAB61041.1|  393|Caenorhabditis elegans Hypothetical
           protein W08D2.1 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 130 VSHFQRFRHNAVKGRALIMRGIHRAVRKHGV 38
           V+H  R RHN   GR  I + I R  R HGV
Sbjct: 224 VAHLVR-RHNNFVGREAIAQNIRRQCRCHGV 253


>AF103732-1|AAD03603.1|  393|Caenorhabditis elegans Wnt homolog
           protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 15/31 (48%), Positives = 17/31 (54%)
 Frame = -3

Query: 130 VSHFQRFRHNAVKGRALIMRGIHRAVRKHGV 38
           V+H  R RHN   GR  I + I R  R HGV
Sbjct: 224 VAHLVR-RHNNFVGREAIAQNIRRQCRCHGV 253


>AF067609-5|AAC17534.1|  644|Caenorhabditis elegans Hypothetical
           protein C23H5.7 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 514 LPPEVMANIEAKYHLNDPIMTQYFQLPENNWAH 612
           LPP + ANI A  H+      Q F L E+ + H
Sbjct: 400 LPPRLQANIAANLHMETLQNIQIFALCESRFMH 432


>AF003140-4|AAD47119.1| 2712|Caenorhabditis elegans Hypothetical
           protein C44E4.1a protein.
          Length = 2712

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 244 HQPTVSPDAHSRSNKQEQWPNPYPAVVLL*CTELCVRLVSHFQ 116
           H P VS  A+  +     WP+      ++ CT+L + +  H Q
Sbjct: 853 HVPLVSSSANPPNTSIMNWPSTSEDSYIIACTDLILLIPQHLQ 895


>AF003140-3|AAM15563.1| 2710|Caenorhabditis elegans Hypothetical
           protein C44E4.1c protein.
          Length = 2710

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 244 HQPTVSPDAHSRSNKQEQWPNPYPAVVLL*CTELCVRLVSHFQ 116
           H P VS  A+  +     WP+      ++ CT+L + +  H Q
Sbjct: 853 HVPLVSSSANPPNTSIMNWPSTSEDSYIIACTDLILLIPQHLQ 895


>AF000299-10|AAC47986.1|  338|Caenorhabditis elegans Seven tm
           receptor protein 162 protein.
          Length = 338

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -1

Query: 309 ISASQCTYSGYRYYPADLSGIATNPRF 229
           ++ S  TY G  YY   +SG  T P F
Sbjct: 170 LNISDITYVGVLYYKKSISGSGTEPNF 196


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,782,433
Number of Sequences: 27780
Number of extensions: 367377
Number of successful extensions: 948
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)