Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30903
         (696 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR...    27   9.0  
At3g59530.2 68416.m06644 strictosidine synthase family protein s...    27   9.0  
At3g59530.1 68416.m06643 strictosidine synthase family protein s...    27   9.0  

>At4g16960.1 68417.m02558 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1041

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 157 KAEQQLDKDSAIVPVYYYVNARLVKPWVGGY 249
           K  +  D D  ++PV+Y V+   V+  +GG+
Sbjct: 92  KCHKDKDLDQMVIPVFYGVDPSHVRKQIGGF 122


>At4g16940.1 68417.m02555 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1103

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 157 KAEQQLDKDSAIVPVYYYVNARLVKPWVGGY 249
           K  +  D D  ++PV+Y V+   V+  +GG+
Sbjct: 85  KCHKDKDLDQMVIPVFYGVDPSHVRKQIGGF 115


>At3g59530.2 68416.m06644 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 403

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 169 QLDKDSAIVPVYYYVNARLVKPWV-GGYTGKIRWIIPIPG 285
           QL KD + +      N RLVK W+ G   G++  +  +PG
Sbjct: 260 QLSKDQSFLLFTETTNCRLVKYWLEGPKMGEVEVVADLPG 299


>At3g59530.1 68416.m06643 strictosidine synthase family protein
           similar to strictosidine synthase [Rauvolfia
           serpentina][SP|P15324]
          Length = 403

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 169 QLDKDSAIVPVYYYVNARLVKPWV-GGYTGKIRWIIPIPG 285
           QL KD + +      N RLVK W+ G   G++  +  +PG
Sbjct: 260 QLSKDQSFLLFTETTNCRLVKYWLEGPKMGEVEVVADLPG 299


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,824,407
Number of Sequences: 28952
Number of extensions: 340030
Number of successful extensions: 824
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 824
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)