Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30902
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   1.4  
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    26   5.5  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   7.3  
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S...    25   9.6  
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    25   9.6  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = +3

Query: 486 APRTPAATRNERAVSHHSKPVPVRKEI 566
           AP TPA T    AV HH  P PVR  I
Sbjct: 730 APPTPAPTP---AVKHHPPPPPVRSSI 753


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 378 HGYISRQFTRRYALPENCNPDT 443
           HG +S+   +R+ L  NC P T
Sbjct: 269 HGSLSKSIIKRFNLRGNCEPQT 290


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +1

Query: 532 ITQNRFRSGRRFKEPHLREVESKRKQKQLTLGNAVNQKS 648
           I  +R R  R+  E HLRE   +R++++  L N  + +S
Sbjct: 643 IENHRPRYSRQNSESHLRENSVERRRREQVLTNIGDSES 681


>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 325 QPTATSSSKVSTRRGRTSMATSLVSSR 405
           QPT  S + + +  GR+S+A+S  SSR
Sbjct: 539 QPTRRSRTPIRSLSGRSSVASSRNSSR 565


>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 24  RTVISLDISHPKTKYKNVTAAIHPGIP 104
           RT++ +D++ P  +  N+    HP IP
Sbjct: 4   RTIVKVDLNKPAWEQPNLHNRWHPDIP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,746
Number of Sequences: 5004
Number of extensions: 52320
Number of successful extensions: 161
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)