Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30902
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0483 - 8804021-8804485 45 5e-05
03_02_0484 + 8805053-8805538 44 8e-05
03_02_0478 + 8775892-8776377 44 8e-05
03_02_0485 - 8808139-8808618 44 1e-04
01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457 42 3e-04
01_01_0229 - 1943473-1943922 42 4e-04
01_01_0231 + 1951047-1951499 42 6e-04
03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015 37 0.012
01_01_0227 + 1933247-1933699 36 0.028
06_01_1017 - 7951985-7952425 34 0.11
12_02_0634 + 21416205-21416954 33 0.20
11_02_0041 - 7669692-7670312 32 0.46
03_05_0543 - 25404630-25405408,25405461-25405605 31 0.61
02_02_0077 - 6586638-6587165 31 1.1
11_01_0268 - 2029007-2029464,2029521-2029615,2030815-2031077,203... 30 1.4
03_01_0480 - 3676529-3676687,3676767-3676931,3677044-3677220,367... 30 1.9
02_01_0760 - 5639315-5639685,5640072-5640360 30 1.9
12_02_1174 - 26696869-26698191 29 4.3
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 4.3
09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977 28 7.5
10_07_0141 + 13347648-13348331 27 9.9
07_01_0180 + 1266975-1267550 27 9.9
>03_02_0483 - 8804021-8804485
Length = 154
Score = 45.2 bits (102), Expect = 5e-05
Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Frame = +3
Query: 162 DGRHHANDVQRLLPAVEADGDGQ*RRRFHHHSNKDKFQVNLDVQHFSPEEISVKTADGYV 341
DG + L P +D R + DV EE+ V+ DG V
Sbjct: 22 DGFPFGSGSGSLFPRANSDAAAFAGARIDWKETPEAHVFKADVPGLKKEEVKVEVEDGNV 81
Query: 342 I-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPDTVESRLSSDGVLTVIAPR 494
+ + G+ EE+ D+ + R +F RR+ LPEN P+ +++ + +GVLTV P+
Sbjct: 82 LQISGERIKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPEQIKASM-ENGVLTVTVPK 139
>03_02_0484 + 8805053-8805538
Length = 161
Score = 44.4 bits (100), Expect = 8e-05
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 440
DV EE+ V+ DG V+ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 70 DVPGLKKEEVKVEVEDGNVLQISGERSKEQEEKTDKWHRVERSSGKFLRRFRLPENTKPE 129
Query: 441 TVESRLSSDGVLTVIAPR 494
+++ + +GVLTV P+
Sbjct: 130 QIKASM-ENGVLTVTVPK 146
>03_02_0478 + 8775892-8776377
Length = 161
Score = 44.4 bits (100), Expect = 8e-05
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 440
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LP+N P+
Sbjct: 70 DVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPE 129
Query: 441 TVESRLSSDGVLTVIAPRTPAATRNERAV 527
+++ + +GVLTV P+ A + +++
Sbjct: 130 QIKASM-ENGVLTVTVPKEEAKKPDVKSI 157
>03_02_0485 - 8808139-8808618
Length = 159
Score = 44.0 bits (99), Expect = 1e-04
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 8/78 (10%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 440
DV EE+ V+ DG ++ + G+ EE+ D+ + R +F RR+ LPEN P+
Sbjct: 68 DVPGLKKEEVKVEVDDGNILQISGERSREQEEKSDKWHRVERSSGKFLRRFRLPENTKPE 127
Query: 441 TVESRLSSDGVLTVIAPR 494
+++ + +GVLTV P+
Sbjct: 128 QIKASM-ENGVLTVTVPK 144
>01_01_0230 - 1946079-1946786,1946981-1947141,1948010-1948457
Length = 438
Score = 42.3 bits (95), Expect = 3e-04
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 440
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 441 TVESRLSSDGVLTVIAPRTPAATRNERAV 527
V++ L +GVLTV P+ +A+
Sbjct: 119 QVKAGL-ENGVLTVTVPKAEVKKPEVKAI 146
>01_01_0229 - 1943473-1943922
Length = 149
Score = 41.9 bits (94), Expect = 4e-04
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 440
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 58 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 117
Query: 441 TVESRLSSDGVLTVIAPRTPAATRNERAV 527
V++ + +GVLTV P+ +A+
Sbjct: 118 QVKASM-ENGVLTVTVPKAEVKKPEVKAI 145
>01_01_0231 + 1951047-1951499
Length = 150
Score = 41.5 bits (93), Expect = 6e-04
Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Frame = +3
Query: 285 DVQHFSPEEISVKTADGYVIV-----EGKHEERQDEHGYISR---QFTRRYALPENCNPD 440
D+ EE+ V+ +G V+V + E++ D+ + R QF RR+ LPEN D
Sbjct: 59 DLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERSSGQFMRRFRLPENAKVD 118
Query: 441 TVESRLSSDGVLTVIAPRTPAATRNERAV 527
V++ + +GVLTV P+ +A+
Sbjct: 119 QVKAGM-ENGVLTVTVPKAEVKKPEVKAI 146
>03_02_0345 + 7664564-7665277,7665672-7665921,7665996-7666015
Length = 327
Score = 37.1 bits (82), Expect = 0.012
Identities = 23/85 (27%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Frame = +3
Query: 273 QVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDE------HGYISRQ----FTRRYALP 422
++ D+ S EE+ V D +++ G+H++ + E G+ + + R ALP
Sbjct: 145 RMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALP 204
Query: 423 ENCNPDTVESRLSSDGVLTVIAPRT 497
+ C+ V + L +GVL V P+T
Sbjct: 205 DECDKSKVRAEL-KNGVLLVTVPKT 228
>01_01_0227 + 1933247-1933699
Length = 150
Score = 35.9 bits (79), Expect = 0.028
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = +3
Query: 345 VEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTVIAPR 494
V+GK++ER S +F RR+ LP D V + + +GVLTV P+
Sbjct: 87 VDGKNDERWHHVERSSGKFQRRFRLPRGARVDQVSASM-DNGVLTVTVPK 135
>06_01_1017 - 7951985-7952425
Length = 146
Score = 33.9 bits (74), Expect = 0.11
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Frame = +3
Query: 312 ISVKTADGYVIVEGKHEERQDEHGYISR----QFTRRYALPENCNPDTVESRLSSDGVLT 479
++V+ A + E + E +D +++ +F R ALP + + + + + GVLT
Sbjct: 65 LTVRGAAPHAAAEKEREREKDVVWHVAERGRPEFAREVALPAEVRVEQIRASVDN-GVLT 123
Query: 480 VIAPRTPAATR-NERAVSHHSK 542
V+ P+ PA R R ++ SK
Sbjct: 124 VVVPKEPAPARPRTRPIAVSSK 145
>12_02_0634 + 21416205-21416954
Length = 249
Score = 33.1 bits (72), Expect = 0.20
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)
Frame = -2
Query: 621 SQLFLFSFALNFPQVGLLKSPSGP-EPVLSDGKQLARFLWQPESWERSRSARRQRTTEIR 445
++ F +F N Q G+ + P E + LAR QPE R R R T R
Sbjct: 28 TERFAATFRRNRGQAGVEGDAASPREETATSADALARLPGQPEEMSTRRKVRPARATVFR 87
Query: 444 QCQG 433
+C G
Sbjct: 88 RCSG 91
>11_02_0041 - 7669692-7670312
Length = 206
Score = 31.9 bits (69), Expect = 0.46
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +3
Query: 396 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATRNERAV 527
+F RR+ +P + V +RL DGVLTV P+ P E V
Sbjct: 141 RFWRRFRMPPGADVGRVAARLD-DGVLTVTVPKVPGHRGREPRV 183
>03_05_0543 - 25404630-25405408,25405461-25405605
Length = 307
Score = 31.5 bits (68), Expect = 0.61
Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 6/114 (5%)
Frame = +3
Query: 264 DKFQVNLDVQHFSPEEISVKTAD-GYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 440
+ ++LD F EEI V + G++ G ER SR F + + LP +CN D
Sbjct: 39 NSIHLSLDQLGFKREEIRVLVDNHGHLRTRG---ERPVAGNRWSR-FQKDFQLPADCNVD 94
Query: 441 TVESRLSSDGVLTVI-----APRTPAATRNERAVSHHSKPVPVRKEI*GAPLAG 587
+ ++ ++ + + +P TP+ T + P P + APL G
Sbjct: 95 GIRAKFENEALTITLPKKTPSPLTPSPTPSPVTPPPQQPPQPEPRRPPAAPLPG 148
>02_02_0077 - 6586638-6587165
Length = 175
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 13/86 (15%)
Frame = +3
Query: 282 LDVQHFSPEEISVKTADGYVIVEGKHEERQ----DEHG----YISRQ-----FTRRYALP 422
+D+ +P ++ V+ DG V+ R D+ G Y+ + F RR+ LP
Sbjct: 66 VDMPGVAPADVRVEVEDGNVLAISGERRRPAGDGDDGGEGVKYLRMERRMGKFMRRFPLP 125
Query: 423 ENCNPDTVESRLSSDGVLTVIAPRTP 500
E+ + D V + DGVLTV + P
Sbjct: 126 ESADLDGVRAEY-KDGVLTVTVDKKP 150
>11_01_0268 -
2029007-2029464,2029521-2029615,2030815-2031077,
2031154-2031279,2031404-2032996
Length = 844
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -3
Query: 512 SCGSRSPGSDHGQHAVRGQ 456
SCG GSD G+HA RGQ
Sbjct: 131 SCGFEFEGSDQGRHAARGQ 149
>03_01_0480 -
3676529-3676687,3676767-3676931,3677044-3677220,
3678170-3678273,3678700-3678843,3679831-3679898,
3680059-3680162,3680759-3680767,3681572-3681657,
3681918-3683373
Length = 823
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = -3
Query: 593 STSRKWGSLNLLPDRNRF*VMGNSSLVSCGSRSPGSDHGQHAVRGQPR 450
ST + S + + N +MGN SLVS G + H H V G R
Sbjct: 540 STQQATSSAKNISNVNLGRLMGNQSLVSVGKKKYADTHRLHPVHGTSR 587
>02_01_0760 - 5639315-5639685,5640072-5640360
Length = 219
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/94 (22%), Positives = 47/94 (50%), Gaps = 8/94 (8%)
Frame = +3
Query: 258 NKDKFQVNLDVQHFSPEEISVKTADGYVIVEGK-----HEER-QDEHG--YISRQFTRRY 413
+++++++ +V +++ V DG + + G+ E+R +D G + + +
Sbjct: 120 DEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAATYHAGL 179
Query: 414 ALPENCNPDTVESRLSSDGVLTVIAPRTPAATRN 515
LPE+ + + + + DGVL V PR+P R+
Sbjct: 180 LLPEDAVAEGITAEVR-DGVLHVTVPRSPERKRS 212
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +3
Query: 276 VNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESR 455
V + + F E++ V+ D + ++ E G +F + LP+NC+ D V +R
Sbjct: 26 VEIALPGFRKEQVRVQV-DNHGMLRATGERPPAARGGRWVRFKKDLRLPDNCDADAVRAR 84
Query: 456 LSSDGVLTVIAPRTPAA 506
D L + P AA
Sbjct: 85 F-DDHKLIITLPLVAAA 100
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/71 (28%), Positives = 25/71 (35%)
Frame = +3
Query: 156 SPDGRHHANDVQRLLPAVEADGDGQ*RRRFHHHSNKDKFQVNLDVQHFSPEEISVKTADG 335
S D RH + R E +GQ R+ N F VQH S EE +
Sbjct: 383 SSDSRHRRPEYGRGNSTSELGSEGQRRQESQQGRNGPTFNRRRGVQHMSEEEREARLRQM 442
Query: 336 YVIVEGKHEER 368
E E+R
Sbjct: 443 QADAEVHEEQR 453
>09_03_0052 + 11904633-11905616,11906324-11906491,11906588-11906977
Length = 513
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 484 SLPGLRLPQETSELFPITQNRFRSGRRFKEPHLREVES 597
SLP + P + L P+T + R K HLRE E+
Sbjct: 13 SLPSPKSPDYRARLAPVTADDTRISASLKSGHLREGEA 50
>10_07_0141 + 13347648-13348331
Length = 227
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 1/49 (2%)
Frame = +3
Query: 381 GYISRQFTRRYALPENCNPDTVESRLSSD-GVLTVIAPRTPAATRNERA 524
G+I+ +F RRY + ++ P+ E+ L+ D +L ++ A N RA
Sbjct: 31 GFITNKFGRRYGVGDHGTPE--EAALAHDRAILAILGAHASPAALNFRA 77
>07_01_0180 + 1266975-1267550
Length = 191
Score = 27.5 bits (58), Expect = 9.9
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = -2
Query: 528 KQLARFLWQPESWERSRSARRQRTTEIRQCQGCSFQAERNA 406
++L R + ES RSR+ RRQR E+ + +AER A
Sbjct: 76 RRLRRKISNRESARRSRARRRQRVEELERAAD-ELRAERRA 115
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,888,326
Number of Sequences: 37544
Number of extensions: 392400
Number of successful extensions: 1357
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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