Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30902
(658 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12) 68 6e-12
SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26) 67 1e-11
SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29) 60 2e-09
SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 3e-09
SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26) 59 3e-09
SB_21424| Best HMM Match : HSP20 (HMM E-Value=0) 58 8e-09
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 8e-09
SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26) 56 3e-08
SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05) 42 3e-04
SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5) 33 0.27
SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05) 31 0.62
SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05) 31 1.1
SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26) 29 2.5
SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.3
SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.7
SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2) 28 7.7
SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 28 7.7
>SB_16632| Best HMM Match : HSP20 (HMM E-Value=1e-12)
Length = 210
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Frame = +3
Query: 264 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 440
DK ++ LDV+++ PEEIS+K G + ++GKH+ + EHGY + +F R Y LP+ +
Sbjct: 38 DKVEIATLDVKNYRPEEISLKVEHGRIKIDGKHKS-EGEHGYETSEFHRSYNLPDGVDVS 96
Query: 441 TVESRLSSDGVLTVIA 488
TV SR++ DG+L + A
Sbjct: 97 TVSSRITGDGLLHIEA 112
Score = 31.9 bits (69), Expect(2) = 0.083
Identities = 16/42 (38%), Positives = 25/42 (59%)
Frame = +3
Query: 405 RRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATRNERAVS 530
R + LP++ + D++ SRL DG L + A R T +ER V+
Sbjct: 161 RHFVLPKDVDMDSLVSRLGKDGKLYIEAKRILHPTPHERQVN 202
Score = 21.4 bits (43), Expect(2) = 0.083
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +3
Query: 267 KFQVNLDVQHFSPE 308
+F V LDV FSP+
Sbjct: 142 RFTVTLDVSSFSPD 155
>SB_21425| Best HMM Match : HSP20 (HMM E-Value=1.9e-26)
Length = 185
Score = 66.9 bits (156), Expect = 1e-11
Identities = 35/89 (39%), Positives = 55/89 (61%), Gaps = 2/89 (2%)
Frame = +3
Query: 264 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 440
DKFQ+ LDV+ F PEEI+ K +G + V G + + E G+ S++F R Y LPE +
Sbjct: 4 DKFQIATLDVREFKPEEITCKVENGKIKVSGL-QRHESEEGFDSKEFRRCYNLPEGVDES 62
Query: 441 TVESRLSSDGVLTVIA-PRTPAATRNERA 524
++ +R++ DG+L V A ++P AT +A
Sbjct: 63 SISTRIAEDGMLHVEALKKSPPATTENKA 91
Score = 59.7 bits (138), Expect = 2e-09
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Frame = +3
Query: 267 KFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYIS-RQFTRRYALPENCNPDT 443
KF + LDV F PEE+ VK + V + E +EHG+ + RQF R + LP + DT
Sbjct: 99 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPREVDMDT 156
Query: 444 VESRLSSDGVLTVIAPRTP 500
+ RL DGVL + A + P
Sbjct: 157 LVPRLGKDGVLYIEADKRP 175
>SB_49292| Best HMM Match : HSP20 (HMM E-Value=1.9e-29)
Length = 189
Score = 59.7 bits (138), Expect = 2e-09
Identities = 29/69 (42%), Positives = 44/69 (63%)
Frame = +3
Query: 282 LDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLS 461
LDV+ + PEEIS K +G V V+G+H + E G+ ++F R + LPE +P+ V SR+S
Sbjct: 12 LDVKEYRPEEISFKVENGVVKVQGRH-VNEGEFGFELKEFRRTFTLPEGIDPENVTSRIS 70
Query: 462 SDGVLTVIA 488
+ G L + A
Sbjct: 71 NHGHLHIEA 79
Score = 52.8 bits (121), Expect = 2e-07
Identities = 26/83 (31%), Positives = 44/83 (53%)
Frame = +3
Query: 255 SNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 434
+ +DKF + +DV F PE I V+ ++V HE + H Y + F R++ LP +
Sbjct: 93 AKEDKFSMAIDVAGFPPESIKVQVLGNELLVNANHEVEHEGH-YHAMHFNRQFVLPREVD 151
Query: 435 PDTVESRLSSDGVLTVIAPRTPA 503
D++ +RL +G L A ++ A
Sbjct: 152 MDSLTTRLDKEGKLHFEAKKSVA 174
>SB_38963| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 431
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 432 NPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 264 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 443
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 444 VESRLSSDGVL 476
+ +RL +G L
Sbjct: 156 LTTRLDKEGKL 166
>SB_37349| Best HMM Match : HSP20 (HMM E-Value=7.3e-26)
Length = 190
Score = 59.3 bits (137), Expect = 3e-09
Identities = 29/79 (36%), Positives = 50/79 (63%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 431
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R +ALPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFALPEGV 60
Query: 432 NPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 264 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 443
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 444 VESRLSSDGVL 476
+ +RL +G L
Sbjct: 156 LTTRLDKEGKL 166
>SB_21424| Best HMM Match : HSP20 (HMM E-Value=0)
Length = 424
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 431
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 432 NPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 54.8 bits (126), Expect = 6e-08
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 1/76 (1%)
Frame = +3
Query: 264 DKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPD 440
D+ ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 239 DELEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGVEAS 297
Query: 441 TVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 298 NVKTRISNHGQLHIEA 313
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 264 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 443
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 444 VESRLSSDGVL 476
+ +RL +G L
Sbjct: 156 LTTRLDKEGKL 166
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 264 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 443
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 331 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 389
Query: 444 VESRLSSDGVL 476
+ +RL +G L
Sbjct: 390 LTTRLDKEGKL 400
>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 57.6 bits (133), Expect = 8e-09
Identities = 28/79 (35%), Positives = 49/79 (62%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 431
+N++K ++ LDV+ + PEEIS K +G+V V+G+H + G+ ++F R + LPE
Sbjct: 2 ANENKLEIAKLDVREYRPEEISFKVENGFVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 60
Query: 432 NPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 61 EASNVKTRISNHGQLHIEA 79
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/71 (32%), Positives = 38/71 (53%)
Frame = +3
Query: 264 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 443
DKF + +DV F P+ I V+ ++V HE + H Y + F R++ LP + D+
Sbjct: 97 DKFSMAMDVTGFPPDSIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFVLPREVDMDS 155
Query: 444 VESRLSSDGVL 476
+ +RL +G L
Sbjct: 156 LTTRLDKEGKL 166
>SB_58906| Best HMM Match : HSP20 (HMM E-Value=3e-26)
Length = 695
Score = 56.0 bits (129), Expect = 3e-08
Identities = 28/79 (35%), Positives = 48/79 (60%), Gaps = 1/79 (1%)
Frame = +3
Query: 255 SNKDKFQV-NLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENC 431
+N++K ++ LDV+ + PEEIS K +G V V+G+H + G+ ++F R + LPE
Sbjct: 3 NNENKLEIAKLDVREYRPEEISFKVENGVVKVQGRH-VNEGPFGFELKEFRRTFTLPEGV 61
Query: 432 NPDTVESRLSSDGVLTVIA 488
V++R+S+ G L + A
Sbjct: 62 EASNVKTRISNHGQLHIEA 80
Score = 52.4 bits (120), Expect = 3e-07
Identities = 25/74 (33%), Positives = 40/74 (54%)
Frame = +3
Query: 255 SNKDKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCN 434
S DKF + +DV+ F PE I V+ ++V HE + H Y + F R++ LP +
Sbjct: 94 SKDDKFSMAMDVKGFPPEAIKVQVLGNELLVSANHEVEHEGH-YHAMHFNRQFILPREVD 152
Query: 435 PDTVESRLSSDGVL 476
D++ +RL +G L
Sbjct: 153 MDSLTTRLDKEGKL 166
>SB_58907| Best HMM Match : HSP20 (HMM E-Value=4.2e-05)
Length = 259
Score = 42.3 bits (95), Expect = 3e-04
Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 1/54 (1%)
Frame = +3
Query: 267 KFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYI-SRQFTRRYALPE 425
KF + LDV F PEE+ VK + V + E +EHG+ +RQF R + LP+
Sbjct: 27 KFTLALDVSDFKPEEVDVKVYGHELSVRARQE--CEEHGFFTARQFNRHFVLPQ 78
>SB_24406| Best HMM Match : DUF536 (HMM E-Value=1.5)
Length = 436
Score = 32.7 bits (71), Expect = 0.27
Identities = 12/22 (54%), Positives = 17/22 (77%)
Frame = +3
Query: 354 KHEERQDEHGYISRQFTRRYAL 419
KHEER+D HGY+ + T ++AL
Sbjct: 72 KHEEREDRHGYLKDKVTLQHAL 93
>SB_27641| Best HMM Match : Ank (HMM E-Value=8.6e-05)
Length = 397
Score = 31.5 bits (68), Expect = 0.62
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Frame = +3
Query: 330 DGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRL-----SSDGVLTVIAPR 494
D Y + K + HG++ R+ R + + + +T+ + S+DG+ ++
Sbjct: 83 DNYPMAPPKTSSKLWLHGHLDRKSDRWFYIDDGPLFETLPHVIDHYSKSADGLPVLLQFA 142
Query: 495 TPAATRNERAVSHHSKPVPVRKEI 566
P R A++H++ P PVR+++
Sbjct: 143 VPPDGRTPIAIAHYTPPQPVRRQL 166
>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
Length = 3397
Score = 30.7 bits (66), Expect = 1.1
Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 9/82 (10%)
Frame = +3
Query: 348 EGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLT----VI--APRTPAAT 509
E K+EE DEHG I R+ T+ TV ++ DGV T VI P ++T
Sbjct: 1187 ETKYEEYVDEHGQIIRRTTKVKHTAVKQERTTVTKTVTRDGVTTREANVIESPPEVESST 1246
Query: 510 ---RNERAVSHHSKPVPVRKEI 566
R+E + KP+ ++++
Sbjct: 1247 QVYRDEESSVRDIKPIKTKEDV 1268
>SB_42731| Best HMM Match : fn3 (HMM E-Value=1.7e-26)
Length = 671
Score = 29.5 bits (63), Expect = 2.5
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 432 NPDTVESRLSSDGVLTVIAPRTPAATRNERAVSH 533
NPD R+ V +I P PA++RN RAVSH
Sbjct: 327 NPDI---RVRGYNVTYIILPIFPASSRNRRAVSH 357
>SB_13144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 266
Score = 29.1 bits (62), Expect = 3.3
Identities = 10/36 (27%), Positives = 19/36 (52%)
Frame = +3
Query: 318 VKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPE 425
+++A GYV+ G H + + G + + R LP+
Sbjct: 10 IRSARGYVVTSGSHTSKSEVRGIMEETCSNRNPLPQ 45
>SB_33144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 27.9 bits (59), Expect = 7.7
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 514 TSELFPITQNRFRSGRRFKEPHLREVESKRKQKQLTLGN 630
T+ F ++ N+F SGRR + VE KR +K + N
Sbjct: 103 TTFKFEMSSNKFESGRRTNYSNGPAVEEKRPRKNQDVNN 141
>SB_29635| Best HMM Match : E-MAP-115 (HMM E-Value=1.2)
Length = 2658
Score = 27.9 bits (59), Expect = 7.7
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 529 PITQNRFRSGRRFKEPHLREVESKRKQKQLTLGNA 633
P TQ F R ++E H+R +K QK LTL +A
Sbjct: 977 PNTQTEFLLPRVYQERHIRSEAAKLVQKILTLFHA 1011
>SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16)
Length = 2352
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Frame = +2
Query: 74 CHCCHSSWDTNLTA--FAIRTS--GWRLLLTIS*R--PSSRQRCPEITTG 205
C CCH S+ ++ +A+ + G L+ R PS+R+RCP+ TG
Sbjct: 2062 CTCCHKSYHVGISCGDYALSKTEIGQEHLVEKWMREDPSNRKRCPKCRTG 2111
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,118,614
Number of Sequences: 59808
Number of extensions: 426811
Number of successful extensions: 2074
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2069
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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