Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30902
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          25   0.64 
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      25   0.64 
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   2.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   3.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    21   7.8  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.8  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 657 HAYTFLIHSVPESQLFLFSFALNFPQV 577
           H Y  L H+ P    F+ S +LNFPQ+
Sbjct: 230 HFYFMLNHNYPP---FMLSNSLNFPQI 253


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 25.0 bits (52), Expect = 0.64
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 657 HAYTFLIHSVPESQLFLFSFALNFPQV 577
           H Y  L H+ P    F+ S +LNFPQ+
Sbjct: 230 HFYFMLNHNYPP---FMLSNSLNFPQI 253


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = -3

Query: 536 VMGNSSLVSCGSRSPG-SDH 480
           VMGN   V  G+R PG +DH
Sbjct: 356 VMGNHDRVRVGTRYPGRADH 375


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -3

Query: 536 VMGNSSLVSCGSRSPGSDHGQHAVRGQPRFDSVRVAVF 423
           +   S LVS GS +PG+       +  P F   RVA +
Sbjct: 383 IRNRSGLVS-GSSTPGTGREHDPAKFPPSFRISRVAAY 419


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -2

Query: 591 NFPQVGLLKSPSGPEPVLSDGKQLARFL 508
           N PQ G +  P G E +L+   ++ + +
Sbjct: 365 NLPQSGRINDPEGNEYMLALSNRMQKII 392


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = +3

Query: 249 HHSNKDKFQVNLDVQHFSPE 308
           H +N D++   L ++H SP+
Sbjct: 659 HVTNMDQYNSILMIEHLSPD 678


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,556
Number of Sequences: 438
Number of extensions: 3511
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)