Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30902
         (658 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g53540.1 68414.m06074 17.6 kDa class I small heat shock prote...    44   1e-04
At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein (HS...    43   2e-04
At4g27670.1 68417.m03979 25.3 kDa small heat shock protein, chlo...    43   2e-04
At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein (HS...    42   3e-04
At2g29500.1 68415.m03583 17.6 kDa class I small heat shock prote...    42   4e-04
At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein (HS...    40   0.001
At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein (HS...    39   0.003
At1g52560.1 68414.m05933 26.5 kDa class I small heat shock prote...    37   0.010
At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock pro...    32   0.29 
At2g27140.1 68415.m03261 heat shock family protein contains simi...    31   0.67 
At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family prote...    29   3.6  
At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1 [Ra...    29   3.6  
At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zi...    27   8.3  
At1g27680.1 68414.m03383 glucose-1-phosphate adenylyltransferase...    27   8.3  

>At1g53540.1 68414.m06074 17.6 kDa class I small heat shock protein
           (HSP17.6C-CI) (AA 1-156) identical to (17.6 kDa class I
           heat shock protein (HSP 17.6) (AA 1-156)(SP:P13853)
           (GI:4376161) (Arabidopsis thaliana) (Nucleic Acids Res.
           17 (19), 7995 (1989))
          Length = 157

 Score = 43.6 bits (98), Expect = 1e-04
 Identities = 25/80 (31%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
 Frame = +3

Query: 285 DVQHFSPEEISVKTADGYVI-VEGK----HEERQDEHGYISR---QFTRRYALPENCNPD 440
           D+     EE+ V+  DG ++ + G+    +EE+ D+   + R   +FTRR+ LPEN   +
Sbjct: 66  DLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKME 125

Query: 441 TVESRLSSDGVLTVIAPRTP 500
            +++ +  +GVL+V  P+ P
Sbjct: 126 EIKASM-ENGVLSVTVPKVP 144


>At1g07400.1 68414.m00789 17.8 kDa class I heat shock protein
           (HSP17.8-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]; contains Pfam
           PF00011: Hsp20/alpha crystallin family
          Length = 157

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 8/90 (8%)
 Frame = +3

Query: 285 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISR---QFTRRYALPENCNPD 440
           D+     EE+ V+  D  V+ + G+     EE+QD    + R   QF+R++ LPEN   D
Sbjct: 64  DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGQFSRKFKLPENVKMD 123

Query: 441 TVESRLSSDGVLTVIAPRTPAATRNERAVS 530
            V++ +  +GVLTV  P+   A +  +  S
Sbjct: 124 QVKASM-ENGVLTVTVPKVEEAKKKAQVKS 152


>At4g27670.1 68417.m03979 25.3 kDa small heat shock protein,
           chloroplast precursor (HSP25.3-P) identical to small
           heat shock protein, chloroplast precursor SP:P31170 from
           [Arabidopsis thaliana]; identified in Scharf, K-D., et
           al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 227

 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 18/80 (22%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
 Frame = +3

Query: 267 KFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQ---FTRRYALPENCNP 437
           + ++  D+   S E++ +   D  ++++G+ ++   +  +  R    +  R  LP+NC  
Sbjct: 137 EIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEK 196

Query: 438 DTVESRLSSDGVLTVIAPRT 497
           D +++ L  +GVL +  P+T
Sbjct: 197 DKIKAEL-KNGVLFITIPKT 215


>At5g59720.1 68418.m07486 18.1 kDa class I heat shock protein
           (HSP18.1-CI) identical to 18.2 kDa class I heat shock
           protein (HSP 18.2) (SP:P19037)[Arabidopsis thaliana];
           contains Pfam profile: PF00011 Hsp20/alpha crystallin
           family
          Length = 161

 Score = 42.3 bits (95), Expect = 3e-04
 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
 Frame = +3

Query: 285 DVQHFSPEEISVKTADGYVI-VEGK----HEERQDEHGYISR---QFTRRYALPENCNPD 440
           D+     EE+ V+  D  V+ + G+    +EE+ D+   + R   +F RR+ LPEN   +
Sbjct: 68  DLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKME 127

Query: 441 TVESRLSSDGVLTVIAPRTP 500
            V++ +  +GVLTV+ P+ P
Sbjct: 128 EVKATM-ENGVLTVVVPKAP 146


>At2g29500.1 68415.m03583 17.6 kDa class I small heat shock protein
           (HSP17.6B-CI) contains Pfam PF00011: Hsp20/alpha
           crystallin family; identified in Scharf, K-D., et al,
           Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 153

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 27/89 (30%), Positives = 48/89 (53%), Gaps = 8/89 (8%)
 Frame = +3

Query: 285 DVQHFSPEEISVKTADGYVI-VEG-KHEERQDEHGYISR------QFTRRYALPENCNPD 440
           D+     EE+ V+  +  V+ + G +H E++D++    R      QFTRR+ LPEN   D
Sbjct: 62  DLPGLKKEEVKVEIEEDSVLKISGERHVEKEDKNDTWHRVERSSGQFTRRFRLPENVKMD 121

Query: 441 TVESRLSSDGVLTVIAPRTPAATRNERAV 527
            V++ +  +GVLTV  P+      + +++
Sbjct: 122 QVKAAM-ENGVLTVTVPKAETKKADVKSI 149


>At3g46230.1 68416.m05004 17.4 kDa class I heat shock protein
           (HSP17.4-CI) identical to 17.4 kDa class I heat shock
           protein SP:P19036 from [Arabidopsis thaliana]
          Length = 156

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 26/89 (29%), Positives = 47/89 (52%), Gaps = 8/89 (8%)
 Frame = +3

Query: 285 DVQHFSPEEISVKTADGYVI-VEGK----HEERQDEHGYISR---QFTRRYALPENCNPD 440
           DV     EE+ V+  DG ++ + G+    +EE+ D    + R   +F RR+ LPEN   +
Sbjct: 65  DVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVE 124

Query: 441 TVESRLSSDGVLTVIAPRTPAATRNERAV 527
            V++ +  +GVL+V  P+   +    ++V
Sbjct: 125 EVKASM-ENGVLSVTVPKVQESKPEVKSV 152


>At1g59860.1 68414.m06742 17.6 kDa class I heat shock protein
           (HSP17.6A-CI) similar to 17.5 kDa class I heat shock
           protein SP:P04793 from [Glycine max]
          Length = 155

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 26/78 (33%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
 Frame = +3

Query: 285 DVQHFSPEEISVKTADGYVI-VEGKH----EERQDEHGYISRQ---FTRRYALPENCNPD 440
           D+     EE+ V+  D  V+ + G+     EE+QD    + R    F+R++ LPEN   D
Sbjct: 62  DLPGMKKEEVKVEIEDDSVLKISGERHVEKEEKQDTWHRVERSSGGFSRKFRLPENVKMD 121

Query: 441 TVESRLSSDGVLTVIAPR 494
            V++ +  +GVLTV  P+
Sbjct: 122 QVKASM-ENGVLTVTVPK 138


>At1g52560.1 68414.m05933 26.5 kDa class I small heat shock
           protein-like (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family; identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 232

 Score = 37.1 bits (82), Expect = 0.010
 Identities = 21/98 (21%), Positives = 50/98 (51%), Gaps = 9/98 (9%)
 Frame = +3

Query: 264 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQD-----EHGYISRQ----FTRRYA 416
           D +++  +V   + E++ +   DG + ++G H+  ++     E  Y S +    +    +
Sbjct: 134 DCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLS 193

Query: 417 LPENCNPDTVESRLSSDGVLTVIAPRTPAATRNERAVS 530
           LP++   + +++ L + GVL ++ PRT    +N + +S
Sbjct: 194 LPDDAKVEDIKAELKN-GVLNLVIPRTEKPKKNVQEIS 230


>At4g21870.1 68417.m03163 26.5 kDa class P-related heat shock
           protein (HSP26.5-P) contains Pfam profile: PF00011
           Hsp20/alpha crystallin family: identified in Scharf,
           K-D., et al,Cell Stress & Chaperones (2001) 6: 225-237.
          Length = 134

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 20/77 (25%), Positives = 34/77 (44%)
 Frame = +3

Query: 264 DKFQVNLDVQHFSPEEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDT 443
           D    ++D+     EEI V+  D   ++               + F R++ LPE+ +   
Sbjct: 35  DSHTFSVDLPGLRKEEIKVEIEDSIYLIIRTEATPMSPPDQPLKTFKRKFRLPESIDMIG 94

Query: 444 VESRLSSDGVLTVIAPR 494
           + +    DGVLTVI P+
Sbjct: 95  ISAGYE-DGVLTVIVPK 110


>At2g27140.1 68415.m03261 heat shock family protein contains
           similarity to Swiss-Prot:P27397 18.0 kDa class I heat
           shock protein [Daucus carota]
          Length = 224

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 16/56 (28%), Positives = 27/56 (48%)
 Frame = +3

Query: 396 QFTRRYALPENCNPDTVESRLSSDGVLTVIAPRTPAATRNERAVSHHSKPVPVRKE 563
           +F + + +P N + D+V ++      L V  PRT    +    +   +KP PV KE
Sbjct: 69  RFRKEFPIPPNIDVDSVSAKFEGAN-LVVRLPRTEPMGKQPSPIGTATKPPPVPKE 123


>At5g08600.1 68418.m01023 U3 ribonucleoprotein (Utp) family protein
           contains Pfam profile: PF04615 Utp14 protein
          Length = 822

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/54 (29%), Positives = 22/54 (40%)
 Frame = +3

Query: 306 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSD 467
           +EI     D Y   EG  EE   ++    R     + L E+C  + VES    D
Sbjct: 48  DEIDSAYGDFYEYEEGVPEEESRKNNRYERVVNYEFELAEDCEDENVESEDDDD 101


>At4g34020.1 68417.m04827 DJ-1 family protein similar to CAP1
           [Rattus norvegicus] GI:3250916, ThiJ protein,
           Escherichia coli, PIR:H64771; contains Pfam profile
           PF01965 ThiJ/PfpI family
          Length = 472

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/43 (37%), Positives = 20/43 (46%)
 Frame = -3

Query: 455 PRFDSVRVAVFRQSVTPRELTRDVAMLVLPLLVLTFDDDVAVG 327
           P F SV V       T R+ T  +   + P +V T D DV VG
Sbjct: 36  PSFSSVSVVSSSLGTTRRDRTLKLRSSMSPGMVTTLDSDVGVG 78


>At5g59520.1 68418.m07459 zinc transporter (ZIP2) identical to zinc
           transporter ZIP2 [Arabidopsis thaliana]
           gi|3252868|gb|AAC24198; member of the Zinc (Zn2+)-Iron
           (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 353

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 20/48 (41%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 347 DDDVAVGCLH*DFFGRKVLNV*VDLEFVLIRVM-VEPTSLLAIAICFH 207
           DDDVAV        GR+ +   VD+   LIR      T+LL  A+CFH
Sbjct: 170 DDDVAV-----KEEGRREIKSGVDVSQALIRTSGFGDTALLIFALCFH 212


>At1g27680.1 68414.m03383 glucose-1-phosphate adenylyltransferase
           large subunit 2 (APL2) / ADP-glucose pyrophosphorylase
           identical to SP|P55230
          Length = 518

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +3

Query: 306 EEISVKTADGYVIVEGKHEERQDEHGYISRQFTRRYALPENCNPDTVESRLSSDGVLTV 482
           E+   K  +  +I+ G H  R D   ++ +       +  +C P   ESR S  G+L +
Sbjct: 198 EDAKTKNVEHVLILSGDHLYRMDYMNFVQKHIESNADITVSCLP-MDESRASDFGLLKI 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,048,568
Number of Sequences: 28952
Number of extensions: 293628
Number of successful extensions: 937
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 914
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 936
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1373722560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)