Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30901
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    27   3.0  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    27   3.0  
SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component Sec9|Sc...    26   5.3  
SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.3  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    26   5.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    26   5.3  
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M...    25   9.3  

>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1234

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
 Frame = +2

Query: 275  LPDQPSKENTEEDHSISEEIMEDLLRLRVVVYWTGLAWART---KTPTSSNQHSSAS 436
            L ++ ++E T ED  +SEE++E+ L LR + Y T      T    TPT S  + S+S
Sbjct: 969  LVEEDAEE-TGEDDDLSEEMIEESL-LRHLTYATAKLITETFLQITPTQSRSNVSSS 1023


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +3

Query: 294 KKTPKKITQFRRR*WKISSGSGSWFTGLDWL 386
           K TPKK +  RRR  K+S  SGS F   D++
Sbjct: 80  KYTPKKRSTVRRRHKKVSPSSGS-FVASDYV 109


>SPBC26H8.02c |sec9||SNAP-25 homologue, t-SNARE component
           Sec9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 28/137 (20%), Positives = 54/137 (39%)
 Frame = +3

Query: 222 LAVAATLALQSEGMAASDYQTSLPKKTPKKITQFRRR*WKISSGSGSWFTGLDWLGRGPR 401
           LA  A L  Q+E +A ++ +  + K   K+  +  R    ++    +      W G+  R
Sbjct: 228 LATLANLGEQTEKIATAEKELDISKIHAKRAEEQARELKTLNRSMFAIHVPKPW-GKAKR 286

Query: 402 PLHPAINTAVHQRRSSRLFQSTSFEVI*RFLRQAGFQLSDNALLVKS*EPSKGTSLRAHH 581
                   A  +R + R  +  + +   R  ++    + DN    K    SKG S+    
Sbjct: 287 VAAEEARLAA-KRDAERQDEMLNRQFAYRSQKRIDQAMKDNMKSNKKKGDSKGVSILERS 345

Query: 582 SWDSQPRSEDSDLGKPL 632
            +  +P +ED  + K +
Sbjct: 346 HYQFEPDAEDDAMEKEI 362


>SPBC23G7.06c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 745

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
 Frame = +3

Query: 384 LGRGPRPLHPAINTAVHQRRSSRLFQSTSFEVI*RFLRQAGFQLSDNA-----LLVKS*E 548
           L R P    PA   A  +R+ S L  STS E + R + +     +D A     +  K+ E
Sbjct: 411 LFRAPTIQKPAEKDAKAERKKSGLSSSTSEESLNRHISKRSSNSNDTAPSSHIIADKNLE 470

Query: 549 PSKGTSLRAHHSWDSQPRSEDSD 617
           P+    L+ +   +    SE SD
Sbjct: 471 PTSNIQLKKNPDGNLVETSELSD 493


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 269 IRLPDQPSKENTEEDHSISEEIMEDLLRL 355
           I+LP+    EN E  HSIS+E  + L  +
Sbjct: 22  IKLPEVAKLENIETVHSISKERRDSLTEI 50


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 195 LCNWFYGFKQFFTISHIISQH 133
           L  W YG   FF+IS I ++H
Sbjct: 102 LSTWSYGLTPFFSISSIKTKH 122


>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 12/47 (25%), Positives = 19/47 (40%)
 Frame = +2

Query: 299 NTEEDHSISEEIMEDLLRLRVVVYWTGLAWARTKTPTSSNQHSSAST 439
           NT  D   S+   + L  +    YW G+ W     PT     ++A +
Sbjct: 378 NTLTDKESSDPTEKCLYLIEHQRYWVGVGWLNRTLPTDPPNFTNAGS 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,949
Number of Sequences: 5004
Number of extensions: 47089
Number of successful extensions: 124
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 124
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)