Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30901
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0080 - 17742425-17742578,17742855-17743038,17743202-177432...    29   2.4  
02_05_0636 + 30536717-30537022,30538836-30538952,30539026-305394...    29   4.1  
10_08_0858 - 21108283-21108387,21108820-21108889,21109490-211096...    28   5.5  

>05_04_0080 -
           17742425-17742578,17742855-17743038,17743202-17743273,
           17743343-17743469,17743915-17744135,17744234-17744387
          Length = 303

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -2

Query: 421 LIAGCRGLGPRPSQSSPVNHDPEPEEIFHYLLRN*VIFFGVFFGRLVW*SDAA 263
           L+ G   + P    SS V  DPE + +  +   + V  FGVF   L+   +AA
Sbjct: 231 LLRGYEDVSPSHGFSSSVYQDPEVQSVLQFSESSDVYSFGVFLLELITGREAA 283


>02_05_0636 +
           30536717-30537022,30538836-30538952,30539026-30539478,
           30539589-30540647
          Length = 644

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
 Frame = -1

Query: 185 GSMDLNSFSRFH---TLSLSTYGSNSLDNH 105
           G +D+N FS+FH    L +ST GS S  +H
Sbjct: 157 GDIDVNIFSKFHDILALHVSTVGSQSEQSH 186


>10_08_0858 -
           21108283-21108387,21108820-21108889,21109490-21109646,
           21109930-21110062,21110409-21110583,21113353-21113453,
           21113620-21113706,21115871-21115931,21116114-21116178,
           21116534-21117631
          Length = 683

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = -2

Query: 376 SPVNHDPEPEEIFHYLLRN*VIFFGVFFGRLVW*SDAAIPSDCSANVAATASIS 215
           SP +H P   ++ H  L       GVFF   V+  D   P++  AN  A  +++
Sbjct: 181 SPASHHPLELQLIHENLSGFAAELGVFFHFTVFNIDTLDPAELLANATAGDAVA 234


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,141,524
Number of Sequences: 37544
Number of extensions: 320472
Number of successful extensions: 973
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)