Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30901
         (641 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)                     31   1.1  
SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)                     29   3.2  
SB_39627| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.2  
SB_26633| Best HMM Match : BacA (HMM E-Value=0.91)                     29   4.2  
SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)                     28   5.6  
SB_7294| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.6  
SB_49802| Best HMM Match : IRF (HMM E-Value=0)                         28   7.4  
SB_28928| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_17900| Best HMM Match : CbiQ (HMM E-Value=0.33)
          Length = 766

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = +1

Query: 409 IQQSTQQCINGDLADCFKAQALRSFDDFFDKQASNFQ 519
           +++  ++ IN  +A C + Q  RSFD++++K+ S ++
Sbjct: 532 LKEDLKRIINRIIAGCKQGQGGRSFDEWYNKEQSGYE 568


>SB_37284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1031

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +2

Query: 134 C*EIMCEIVKNCLNP*NQLH 193
           C E++C++ K CLNP ++LH
Sbjct: 429 CQEVVCDLTKTCLNP-DELH 447


>SB_8110| Best HMM Match : AAA (HMM E-Value=0.0032)
          Length = 1199

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 17/58 (29%), Positives = 23/58 (39%)
 Frame = -2

Query: 556 LLGSQLLTKSALSESWKPACRRNRQMTSKXXXXXXXXXXX*CTAVLIAGCRGLGPRPS 383
           LL  Q  +K+A S  WK     + Q +              C A+L+ G RG G   S
Sbjct: 597 LLAKQNKSKAASSSMWKEDSDSDFQQSDSDSEGSCVEDSGLCNAMLVVGPRGAGKTAS 654


>SB_39627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 546

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 433 INGDLADCFKAQALRSFDDFFDKQASNFQ 519
           IN  +A C + Q  RSFD++++K+ S ++
Sbjct: 267 INRIIAGCKQGQGGRSFDEWYNKEQSGYE 295


>SB_26633| Best HMM Match : BacA (HMM E-Value=0.91)
          Length = 660

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 445 LADCFKAQALRSFDDFFDKQASNFQ 519
           +A C + Q  RSFD+++DK+ S ++
Sbjct: 417 IAGCKQGQGGRSFDEWYDKEQSGYE 441


>SB_39767| Best HMM Match : CBAH (HMM E-Value=0.86)
          Length = 1182

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 433 INGDLADCFKAQALRSFDDFFDKQASNFQ 519
           IN  +A C + Q  RSFD+ ++K+ S ++
Sbjct: 302 INRIIAGCKQGQGGRSFDELYNKEQSGYE 330


>SB_7294| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 58

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +1

Query: 328 GDNGRSPQAQGRGLLD 375
           GD+ +SP+ QGRGL+D
Sbjct: 3   GDDAKSPKIQGRGLID 18


>SB_49802| Best HMM Match : IRF (HMM E-Value=0)
          Length = 253

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = +3

Query: 303 PKKITQFRRR*WKISSGSGSWFTGLDWLGRGPR 401
           PK   + R R W         FTGL+WL +G R
Sbjct: 86  PKMQRRLRLRDWLAIQIESGEFTGLEWLDKGRR 118


>SB_28928| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 852

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +1

Query: 445 LADCFKAQALRSFDDFFDKQASNFQ 519
           +A C + Q  RSFD++++K+ S ++
Sbjct: 213 IAGCKQGQGSRSFDEWYNKEQSGYE 237


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,627,383
Number of Sequences: 59808
Number of extensions: 353705
Number of successful extensions: 974
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 895
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)