Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30901
         (641 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM233838-1|CAJ84096.1|  127|Homo sapiens immunoglobulin heavy ch...    32   2.0  
BC001041-1|AAH01041.3|  679|Homo sapiens NSUN2 protein protein.        31   4.6  
AK000310-1|BAA91075.1|  531|Homo sapiens protein ( Homo sapiens ...    31   4.6  
AB255451-1|BAF34150.1|  767|Homo sapiens putative 5-methycytoisi...    31   4.6  

>AM233838-1|CAJ84096.1|  127|Homo sapiens immunoglobulin heavy chain
           variable region protein.
          Length = 127

 Score = 31.9 bits (69), Expect = 2.0
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 318 QFRRR*WKISSGSGSWFTGLDWLGRG 395
           +F+R  W++SS   SWF G+D  G+G
Sbjct: 95  RFKREEWQVSSSFYSWFYGMDVWGQG 120


>BC001041-1|AAH01041.3|  679|Homo sapiens NSUN2 protein protein.
          Length = 679

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +3

Query: 225 AVAATLALQSEG-MAASDYQTSLPK-KTPKKITQFRRR*WKISSGSGSWFTGLDWLGRGP 398
           AV A+L  +SEG +  +D    LP  K    ITQ     WK+ +  G WFT  DW    P
Sbjct: 242 AVIASLLEKSEGALELADVSNELPGLKWMPGITQ-----WKVMTKDGQWFT--DW-DAVP 293

Query: 399 RPLHPAINTAVHQRRSSRLFQSTSFEVI*RFL 494
              H  I   +   +     Q+   E   R L
Sbjct: 294 HSRHTQIRPTMFPPKDPEKLQAMHLERCLRIL 325


>AK000310-1|BAA91075.1|  531|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20303 fis, clone HEP06676. ).
          Length = 531

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +3

Query: 225 AVAATLALQSEG-MAASDYQTSLPK-KTPKKITQFRRR*WKISSGSGSWFTGLDWLGRGP 398
           AV A+L  +SEG +  +D    LP  K    ITQ     WK+ +  G WFT  DW    P
Sbjct: 94  AVIASLLEKSEGALELADVSNELPGLKWMPGITQ-----WKVMTKDGQWFT--DW-DAVP 145

Query: 399 RPLHPAINTAVHQRRSSRLFQSTSFEVI*RFL 494
              H  I   +   +     Q+   E   R L
Sbjct: 146 HSRHTQIRPTMFPPKDPEKLQAMHLERCLRIL 177


>AB255451-1|BAF34150.1|  767|Homo sapiens putative 5-methycytoisine
           methyltransferase protein.
          Length = 767

 Score = 30.7 bits (66), Expect = 4.6
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
 Frame = +3

Query: 225 AVAATLALQSEG-MAASDYQTSLPK-KTPKKITQFRRR*WKISSGSGSWFTGLDWLGRGP 398
           AV A+L  +SEG +  +D    LP  K    ITQ     WK+ +  G WFT  DW    P
Sbjct: 330 AVIASLLEKSEGALELADVSNELPGLKWMPGITQ-----WKVMTKDGQWFT--DW-DAVP 381

Query: 399 RPLHPAINTAVHQRRSSRLFQSTSFEVI*RFL 494
              H  I   +   +     Q+   E   R L
Sbjct: 382 HSRHTQIRPTMFPPKDPEKLQAMHLERCLRIL 413


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,356,065
Number of Sequences: 237096
Number of extensions: 1755448
Number of successful extensions: 5010
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5009
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7085195460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)