Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30901
         (641 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    25   0.82 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   1.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.3  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    23   3.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 11/32 (34%), Positives = 13/32 (40%)
 Frame = +3

Query: 363 WFTGLDWLGRGPRPLHPAINTAVHQRRSSRLF 458
           WF G +W G   R L P I   V     +  F
Sbjct: 625 WFDGFNWEGLRARTLEPPIMPRVQNATDTTNF 656


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 355 QGRGLLDWIGLGEDQD 402
           +G G+  WIG G D D
Sbjct: 478 KGNGVYAWIGAGRDSD 493


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -3

Query: 636 DKGASPSPNPRFEAA 592
           +  +SPSPNPR  +A
Sbjct: 506 ETNSSPSPNPRIASA 520


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 406 RGLGPRPSQSSPVNHDPEPEEIFHYLLRN 320
           R +G   S++  + HDP    +  YL+R+
Sbjct: 40  RCMGGINSRNMDIEHDPGLAAVLQYLIRS 68


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,258
Number of Sequences: 438
Number of extensions: 3130
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)