Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30901
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc ...    31   0.86 
At3g25440.1 68416.m03163 group II intron splicing factor CRS1-re...    29   3.5  
At4g32780.1 68417.m04663 expressed protein                             28   6.1  
At3g42080.1 68416.m04318 hypothetical protein hypothetical prote...    28   6.1  

>At3g58140.1 68416.m06483 phenylalanyl-tRNA synthetase class IIc
           family protein similar to phenylalanine-tRNA synthetase
           [Homo sapiens] GI:3983103; contains Pfam profile
           PF01409: tRNA synthetases class II core domain (F)
          Length = 429

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 373 DWIGLGEDQDPYIQQSTQQCINGDLADCFKAQALRSFDDFFDKQASNFQI 522
           DW G G+D   Y  +  ++C+ G     F +  +R  D +F     +F++
Sbjct: 210 DWNGSGKDSTLYAAEDLKKCLEGLARHLFGSVEMRWVDTYFPFTNPSFEL 259


>At3g25440.1 68416.m03163 group II intron splicing factor
           CRS1-related contains weak similarity to CRS1 [Zea mays]
           gi|9837550|gb|AAG00595
          Length = 380

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/23 (56%), Positives = 16/23 (69%), Gaps = 3/23 (13%)
 Frame = -2

Query: 388 PSQSSPVNHDPE---PEEIFHYL 329
           PS+S+   HDPE   PEE F+YL
Sbjct: 100 PSESAETTHDPEILTPEEHFYYL 122


>At4g32780.1 68417.m04663 expressed protein 
          Length = 224

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 267 ASDYQTSLPKKTPKKITQFRRR*WKISS 350
           A + +T+LP +TP ++ +F  R W IS+
Sbjct: 45  AREVRTALPPETPTEMMEFLGRSWSISA 72


>At3g42080.1 68416.m04318 hypothetical protein hypothetical proteins
           - Arabidopsis thaliana
          Length = 161

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 284 QPSKENTEEDHSISEEIMEDLLRLRVVVYWTG 379
           QP+  +TEE+H I + + ++LL      +WTG
Sbjct: 62  QPTNPSTEEEHLIFDSVAKELLE-----FWTG 88


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,105,305
Number of Sequences: 28952
Number of extensions: 255737
Number of successful extensions: 750
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 749
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)